Pseudomonas cichorii: PCH70_21180
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Entry
PCH70_21180 CDS
T03002
Name
(GenBank) type VI secretion protein, VC_A0114 family
KO
K11893
type VI secretion system protein ImpJ
Organism
pci
Pseudomonas cichorii
Pathway
pci02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
pci00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
PCH70_21180
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pci02044
]
PCH70_21180
Secretion system [BR:
pci02044
]
Type VI secretion system
Imp/Vas secretion system core components
PCH70_21180
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T6SS_VasE
Motif
Other DBs
NCBI-ProteinID:
AHF67271
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Position
2380156..2381490
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AA seq
444 aa
AA seq
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MSVLPDAVCWHEGMQLLPQHFQLQGLRSEALAAHLAQASNPWYWGVSNLDLDPSALFAGQ
VRILALDATLPDGMPLSIRAGSGPMVELDINEAAAASATSTVMVYLAISPLWRAGQLLPL
KGRLQSVLGDSLPDLASGENPETITVWRPNPRLVTEANRADSICLPLLHVRKEGGGFVQL
PYVAPTPLILPESLLGRRVAELCARTREKCMFLAGRLRQAQQAGNQDDAEEIRLQSAALW
ARLPEVEGALSSRVATAQGLHGLLLGMTGSWSVLDPVSGVPAYAPLDFLDLYRGYDQVLT
WLERTLEQVRVGFRSVPFEQADHVFSITLPEQKPRQRLVVGLRMPAGAAAQAATDWLGRA
IIASGPHIPVLARQRMSGLSHQAMSRQEQVAYSMGDDTRLFVIQASGEWFDPTQPLHIVS
SISGGAVSPWQVVLFIDKTTNESA
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgctacctgatgcagtctgctggcacgaaggcatgcaattgctgccccagcat
tttcagttgcaaggcttgcggtccgaagcgctggcagcccatctggcccaggcatcgaac
ccttggtactggggtgtttcgaatcttgatctggatccttcggccctgtttgccgggcag
gttcgcatcctggcgctggacgccaccttgcctgatggcatgcccctgagcattcgtgcc
ggatccgggccgatggtggaacttgatatcaatgaggcggctgcagcatccgccacttcg
accgtgatggtctatctggcgatcagccccttgtggcgcgccggtcagttgttgccgctc
aagggccgcctgcaatcggtgctcggcgattcgctgccggatctggccagtggcgagaac
ccggaaaccatcactgtctggcgacccaatccacggttggtcaccgaggccaacagggcc
gactccatctgcctgcctctgctgcatgtgcgtaaagaaggtggcggtttcgttcaattg
ccctatgtcgcgccgacaccgttgatcctgcctgagtccttgttggggcgtcgcgtggcc
gagttgtgcgcccgcacccgtgaaaaatgcatgtttctggccggacgtttgcgtcaggcc
cagcaggcgggtaatcaggacgatgccgaggaaatccgtctgcaatccgctgcgctctgg
gccagattgcccgaggtggaaggtgccttgagcagccgggtcgccacggcccaggggctg
catgggctgttgctcggaatgaccggtagctggtcggtactggacccggtttcgggtgtg
cctgcttatgcgccgctggactttctcgatctgtatcgcggctacgatcaggtgctgacc
tggctggagcgcactctggagcaggtgcgagtcggctttcgcagcgtgcctttcgagcag
gccgaccatgtcttttccattacgctgcccgagcagaaacctcgccaaagactggtggtc
ggcttgcgcatgccggccggtgcggctgcgcaggcagcaaccgactggctgggcagggca
atcatcgcttccgggccgcacattccggtgctggcacgccagcgcatgagcggtttgtcc
catcaggcgatgagtcgtcaggaacaggttgcctacagcatgggcgatgacacgcggctg
tttgtcatccaggccagtggcgagtggttcgacccgacgcagccgttacacatcgtttca
tccatttcaggaggcgcggtcagcccctggcaagtcgttctgttcatcgacaaaaccacc
aacgaatccgcctga
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