Pseudomonas cichorii: PCH70_31750
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Entry
PCH70_31750 CDS
T03002
Name
(GenBank) mfd protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pci
Pseudomonas cichorii
Pathway
pci03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PCH70_31750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pci03400
]
PCH70_31750
Enzymes [BR:
pci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PCH70_31750
DNA repair and recombination proteins [BR:
pci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PCH70_31750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHF68328
LinkDB
All DBs
Position
3806066..3809518
Genome browser
AA seq
1150 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELRF
FAPTLPVLHFPDWETLPYDLFSPHQDIISQRIASLYSLPELDHGVLVVPITTALHRLAPT
RFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKVPY
RIDLFDDEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRFKARFRERFDVDFR
RSTIFQDLSSGITPAGIEYYIPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRIDPDRPLLPPAELFLPVEDCFSRLKSWPRVVASQQDVEPGVGRERFPAQGLPDL
AIEAKASQPLAALSSFLDEFPGRVLFTAESAGRREVLLELLDRLKLRPKTVDNWLDFVNG
KDRLAITIAPLDEGLVLEQPALALVAESPLFGQRVMQRRRREKRNDGGNNDAVIKNLTEL
REGAPVVHIDHGVGRYLGLATLEVENQVAEFLMLAYAEDAKLYVPVANLHLIARYTGSDD
DTAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGF
PFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVP
TTLLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDD
VKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIA
TPPARRLSVRTFVMEQNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEAR
IGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPESYL
PDVHTRLILYKRIANAADEDGLKDLQVEMIDRFGLLPEPTKSLIRITQLKLHAEQLGIRK
IDAGPQGGRLEFAADTPVDPLTLIKLIQSQPNRYKFEGATLFKFMVPMERPEERFNTIEA
LLERLTPKTA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttcttcctgccgctgctggcaaacaacactggggcaac
cttcccggtgccgcactgagcctggcgattgccgaggccgcaagcgctgccaagcgcttc
accctgcttttgaccgccgacagccagagcgccgagcggctggaacaggagctgaggttc
ttcgcgccgacgctgccggtcctgcactttccggactgggaaaccctgccctacgacctg
ttctcaccgcaccaggacatcatttcccagcggatcgccagcctctacagtctgccggaa
ctggatcatggcgtattggtagtccccatcaccacggccctacatcggctggctccgacc
cggttcctgctgggcagcagcctggtgctggacgtcggccagaagctcgatgtcgaagcc
atgcgtacgcgcctggaagccagcggctatcgctacgtcgatacggtttatgagcatggc
gagttcacggtgcgcggcgcgctgatcgatctgttcccgatgggcagcaaggtgccttac
cggatcgacctgttcgacgacgaaatcgaaaccctgcgcaccttcgaccctgacacacag
cgctccatagacaaggtcgagtcggtccggctgctgccggcccgggaattcccgctgcaa
aaagaagaagtcacgcgcttcaaggcccgttttcgcgagcgcttcgacgtggacttccgg
cgcagcacgatcttccaggacctgagcagcggtatcacgccagccggtatcgagtactac
attccgctgttcttcgaagaaacctcgaccctgttcgattacctgccccaggacactcag
gtgttctcgctgccgggtatcgaacaggccgccgaaaacttctggaacgatgtgcgcaac
cgctacgaagaacgccgcatcgatcccgatcgcccgctgttgccgcctgccgaactgttc
ctgccggtggaagactgcttttcacgcctgaaaagctggccgcgtgtggttgccagccag
caggatgtcgagcccggcgtcggccgcgaacgcttcccggcccagggcctgccggatctg
gccatcgaagccaaggccagccagccgcttgccgcgctgtcgagctttctcgatgagttc
cccggtcgcgtgctgttcaccgccgaatccgccgggcgccgcgaggtgctgctggaactg
ctggatcgcctgaaactgcgccccaaaaccgtcgacaactggctggacttcgtcaacggc
aaggaccggttggcaatcaccattgcgcctctggacgaaggcctggtgctggagcaaccc
gcgcttgcgctggtggccgagagcccgttgttcggtcagcgggtcatgcagcgtcggcgc
cgcgaaaaacgcaacgacggtggcaataacgatgccgtgatcaagaacctcaccgagctg
cgcgaaggcgcgccggtggtgcatatcgatcatggcgttggccgctacctggggctggcg
acactggaagtcgaaaatcaggtggccgaattcctgatgctggcctacgccgaagacgcc
aaattgtatgtgccggtcgccaacctgcacctgatcgcccgctacaccggcagcgacgac
gataccgcgccgctgcaccgcctgggttcggaaacctggcagaaagccaagcgcaaggcc
gccgagcaggtacgcgacgtggcagccgagttgctggatatctatgctcgccgggctgcc
cgcgaaggctacgctttcgcagacccgaaagccgattacgcaaccttcagcgccgggttc
ccgttcgaggaaaccccggaccagcagaccaccatcgaagcggtgcgcgccgacatgctg
gcgcccaagcccatggaccggctggtctgcggcgacgtgggtttcggcaagaccgaagtg
gcaatgcgcgccgcgttcattgcggtacacggcggacgtcaggtggcgattctggtgccc
actaccctgctcgcccagcaacactacaacagcttccgtgaccgctttgcagactggccg
gtccgggtcgaggtcatgagccgcttcaagtccgccaaggaagtgaacgctgccgtggcc
gatctggccgaaggcaagatcgacatcgtcatcggcacccacaagctgctgcaggacgat
gtgaaaatcaagaatctggggctggtgatcatcgacgaagagcaccgtttcggagtgcgt
cagaaggaacagctcaaggccctgcgcagtgaagtcgatatcctgaccctgaccgctaca
ccgatcccgcgcaccttgaacatggcagtgtcgggcatgcgcgacctgtcgatcatcgcc
acaccacctgcccgcaggctttcggtgcgcactttcgtcatggagcagaacaagccgacc
atcaaggaagcgctgttgcgcgagctgctgcgcggcggtcaggtctattacctgcacaac
gacgtcaagaccatcgagaaatgcgccgccgacctggccgaactggtgcccgaggcacgt
atcggcatcggccacggccagatgcgcgaacgagaactcgaacaggtgatgagcgacttc
taccacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtg
ccaagcgccaacaccatcatcatcgaacgtgccgacaaattcgggctggcgcagttgcac
cagttacgcggccgggtcgggcgcagccaccaccaggcctacgcctacctgctgacaccg
ccacgcaagcagatcacgccggatgcggaaaagcgcctggaagccatcgccaacacccag
gacctgggcgcaggctttgtactggccaccaacgacctggaaatccgtggtgccggcgaa
ctgctgggcgacggccagagcggccagatccaggccgtcggcttcacgctgtacatggaa
atgctcgaacgcgccgtcaagtcgatccgcaagggcgaacagccgaacctcgaccagcca
ctgggcggtgggccggaaatcaacctgcgggttccggcactgattcccgagtcgtacctt
ccggatgttcatacccgactgattctctacaagcgcattgccaatgccgccgacgaggat
ggactcaaggacctgcaagtggagatgatcgaccgcttcggcctgctgccagaacccacc
aagagcctgatacgcatcacacagctcaagctgcatgccgagcaactgggcatccgcaag
atcgatgccgggcctcagggtggacgtctggaatttgcagccgatacaccggttgacccg
ctgacactgatcaaactgatccagagccagcccaaccgctacaagttcgaaggtgccaca
ctcttcaaattcatggtccccatggagcgccccgaagagcgcttcaatacgatcgaagcg
ctgcttgagcgcctgaccccgaaaactgcttga
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