Pseudomonas cichorii: PCH70_31850
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Entry
PCH70_31850 CDS
T03002
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pci
Pseudomonas cichorii
Brite
KEGG Orthology (KO) [BR:
pci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pci03032
]
PCH70_31850
03400 DNA repair and recombination proteins [BR:
pci03400
]
PCH70_31850
Enzymes [BR:
pci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PCH70_31850
DNA replication proteins [BR:
pci03032
]
Prokaryotic type
DNA Topoisomerases
PCH70_31850
DNA repair and recombination proteins [BR:
pci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PCH70_31850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF2399
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AHF68338
LinkDB
All DBs
Position
complement(3817762..3820374)
Genome browser
AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASAAKEPAAKRGKATASE
APALSPKEKARRQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRKLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRFKRVVFNEITKKAIQEAFSKPGELDIARVNAQQARRFLDR
VVGYMVSPLLWQKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEIHADLGTAKGAN
VRFEVARENGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVSMARAYIETEFGKKYLPESPN
VYSSKEGAQEAHEAIRPSDVNTHPSKLSGMERDAERLYELIWRQFVACQMPPAQYLSTTV
SVAAGDFELRAKGRILKFDGYTRVLPQISKPGDDGVLPDMAQGETLKLVTLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTGRLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFRKKLEVAEAPDSGMRANQPVMT
DIPCKVCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLTPGDEIAEDDEGESESRVL
RGKHRCPVCSTAMDAYLLDEKHKLHICGNNPDCSGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNAECKNTRKLLKSGEAAPPKMDPVKMPELKCDKVDDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVEGKPTGWRAFYDGGVWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcatcgtggaatccccggctaaggccaagaccatcaacaagtat
ttgggcaaccagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagtgctgccaaggaacctgccgccaagcgtggcaaggcaactgcgagcgaa
gcgcccgcactgagccccaaggaaaaggcccggcgccagttggtgtcgcgtatgggcgtc
gaccccgaacacggctggaaggccaaatacgaaatccttcccggcaaggaaaaggtgatc
gaagagctgcgcaagctggccaaggatgccgacaccatctatctcgcaacggacttggac
cgcgaaggggaagccattgcctggcacctgcgcgaagccatcggtggggatgacagccgc
ttcaagcgcgtggtgttcaacgaaatcaccaagaaagccatccaggaagccttttcaaag
ccaggcgagctggacatcgcccgtgtgaacgcccagcaggcccgtcgcttcctcgaccgc
gtcgtgggctacatggtgtcgccgctgctctggcaaaaggtcgctcgtggcctgtcagcc
ggtcgtgtgcaatcggttgccgtgaagctggtggtggagcgcgagcgcgaaatccgtgcc
ttcaatcctgaagagtactgggaaatccacgccgacctgggtactgccaagggcgccaat
gtgcgctttgaagtcgccagggaaaacggcgaggccttcaagccgctcaacgaagcacag
gccatggcggcgctggagaagctcaaggcctccagctacagcatcgtcaagcgcgaagac
aagccgaccagcagcaagccgtctgcgccattcatcacgtccaccttgcagcaggcagcc
agtaaccgcctgggcttcggtgtgaagaaaaccatgatgatggcccagcgcttgtatgaa
gcgggctacatcacttacatgcgtaccgactccaccaacctgtcggccgatgccgtcagc
atggcgcgcgcttacatcgagacagagttcggcaagaagtacctgccggaatccccgaat
gtctacagcagcaaggaaggcgcacaagaggctcacgaagcgattcgtccgtccgacgtg
aatacccatccaagcaagctgtcgggcatggagcgtgatgccgagcgcctttacgagttg
atctggcgccagttcgtggcctgccagatgccgccggcccagtacctgtcgaccacggtc
agcgttgctgccggtgacttcgagctgcgcgccaagggccgcatcctgaagttcgacggt
tacacccgtgtattgccgcagatctccaagcctggcgatgacggtgtgctgccggacatg
gcgcagggcgaaaccctgaagctggtgacactggacccgagccagcacttcaccaagccg
ccagctcgctactcagaagccagcctggtcaaggaaatggaaaagcgcggcatcggtcgt
ccttcgacctatgcggcgatcatttcgaccattcaggatcgtggctacgttgcattgcac
aatcgtcgtttctattcggaaaaaatgggcgatatcgtcaccggtcgtctgtccgagagc
ttttccaacctgatggactacggcttcacggccggcatggaagagaacctcgacgatgtg
gcccagggcgagcgcgactggaagaacgtgctggacgagttctacggcgacttccgcaag
aagcttgaagtggccgaagcccctgacagcggcatgcgtgccaaccagccggtcatgacc
gacatcccgtgcaaggtgtgcggtcgtccgatgcagatccgcaccgcgtcgaccggtgtc
ttcctcggctgctcgggctacagcctgccacccaaggagcgctgcaaggcgacggtcaac
ctgactcccggtgacgagatcgccgaggatgacgagggtgaatccgaatcccgcgtattg
cgcggcaaacaccgttgcccggtctgcagcacggccatggatgcgtatctgctggacgag
aagcacaagctgcatatctgcggcaacaacccggactgctcgggttacgagatcgaagag
ggcacctatcgcatcaagggctatgaaggtccgagcctggagtgcgataagtgtggcagc
gaaatgcagctcaagaccggccgtttcggcaagttcttcggctgtaccaatgccgaatgc
aagaacactcgcaagctgctcaagagcggcgaggctgcgccaccgaagatggacccggtg
aagatgcctgagctcaagtgcgacaaggtcgatgacacctacatcctgcgcgacggtgct
tccggtctgttcctggccgcaagccagttcccgaagaatcgtgaaacccgtgcgccgctg
gtcattgagatcgtgccgcacaaggatgaaatcgatcccaagtatcacttcctctgcgaa
gcgccgaagaaagaccccgatggccgtccggcggtaattcgttacagccgcaagaccaaa
gagcaatatgtccagaccgaagtggaaggcaagccgaccggctggcgtgctttctatgat
ggcggtgtctggaaggtcgaagacaagcgctga
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