Pseudomonas cichorii: PCH70_36520
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Entry
PCH70_36520 CDS
T03002
Name
(GenBank) rnd protein
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pci
Pseudomonas cichorii
Brite
KEGG Orthology (KO) [BR:
pci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pci03016
]
PCH70_36520
Enzymes [BR:
pci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PCH70_36520
Transfer RNA biogenesis [BR:
pci03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PCH70_36520
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AHF68805
LinkDB
All DBs
Position
complement(4315851..4316984)
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AA seq
377 aa
AA seq
DB search
MAIDIHWIRDDDSLARQCAQWQSLPFVALDTEFMRVDTFYPIAALLQIGDGSSAWLIDPL
LISDWTPLSALLENPDVIKVVHACSEDLEVLLRLTGSLPVPLFDTQLAAAYLNIGFSMGY
SRLVQEVLNIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFGLLRPRLSDEKYLWV
LEDGAELVANLRRETDPYEIYRDAKLAWKLSRAQLAVLRELCAWREIQARSRNLPRNRIV
REHSLWPLAKTQPDNLSALARIEDMHPRTVRQDGEFLLDLIKKSGNLPPDQWPQALPEPL
PIEASGILKGLRAIGQQYAEQLNIAPEVVLRKKTLEALLKSGYPDGPYTLPDSLRGWRRE
LMGQALLDSLANAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcattggattcgcgacgacgacagcctcgcccgacagtgcgcgcag
tggcagtcgctgccatttgtcgcgctcgacaccgagttcatgcgggtcgacaccttttac
cctattgccgcgctgctacagatcggtgacggttccagcgcctggctgatcgatccgctg
ctcatcagcgactggacgcctctgtccgcattgcttgaaaaccccgacgtcatcaaggtg
gttcatgcttgcagcgaagatctggaagtcctgctgcgcctgacgggcagcctgccggtt
ccgctgttcgacacccaactggcggccgcttacctgaacatcgggttttccatgggctat
tcgcgtctggtgcaggaggtgctgaacatcgacctgcccaagggcgagacccgttccgac
tggctgcaacgcccgttgtcggaaacccagatcagctatgccgctgaagatgccgtgcat
ctggccgagcttttcggtctgttgcggccacgcctgtcggacgagaaatacctctgggtt
ctcgaggatggtgccgagttggtcgccaacctgcgccgggaaaccgatccctacgaaatt
taccgcgacgccaagctggcctggaaactgtctcgtgcccagttggcggtattgcgtgag
ctgtgcgcctggcgcgagatacaggcgcgttcgcgtaacctgccgcgcaatcgcatcgta
cgtgagcactcgttgtggccgcttgccaagacccagccggacaacctgagtgccctggcc
cgaatcgaagacatgcacccgcgtacggtacgccaggatggtgagttcctgctggacctg
atcaagaagtccggcaatctgccgccggatcaatggccgcaggcgttgcccgagcctttg
ccgatcgaggcttccggcatcctcaaaggcttgcgggccattggtcagcaatacgctgaa
caactgaatattgcccccgaggtcgtgctgcgcaagaagaccctcgaagccttgctcaag
agtggctaccccgatggcccttacacattgcccgattcgctgcgtggctggcgtcgcgaa
ttaatgggccaggcgctgctcgacagcctggccaatgcaggagaacagccttga
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