Pseudomonas cichorii: PCH70_38950
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Entry
PCH70_38950 CDS
T03002
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pci
Pseudomonas cichorii
Brite
KEGG Orthology (KO) [BR:
pci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pci03009
]
PCH70_38950
Enzymes [BR:
pci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCH70_38950
Ribosome biogenesis [BR:
pci03009
]
Prokaryotic type
rRNA helicases
PCH70_38950
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Abhydrolase_1
Motif
Other DBs
NCBI-ProteinID:
AHF69048
LinkDB
All DBs
Position
complement(4560533..4561873)
Genome browser
AA seq
446 aa
AA seq
DB search
MFSEFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILN
RLIGPARVRVDIRAVILLPTRELAQQTLKEVERFSQFTFIKAGLITGGEDFKVQAAMLRK
VPDILIGTPGRLLEHLNAGNLDLKLVEVLVLDEADRMLDMGFSEDVERLAGECADRQQTM
LFSATTGGSGLRDMIRKVLKDPQHLQLNNVSELASGTRQQIITADHNVHKEQILNWLLAN
ETYQKAIVFTNTKAMADRLYGRLVAQEYKAFVLHGDKDQKDRKAAIDRLKQGGAKILVAT
DVAARGLDVDGLDLVINFDMPRSGDDYVHRVGRTGRAGSEGLAVSLICHGDWNLMSSIER
YLKQSFERRTIKEVKGTYGGPKKVKASGKAVGTKKKKTDTKGDKKKVAAKGPTKRKSVNR
PKSDSLVSKDGMAPLKKRSTPAPAAE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
gtgttttccgaattcgccctgcacgaacgcctgcttaaagctgtggccgagcttaaattt
gtcgagcctacacctgtgcaggccgccgctattccgctggcattgcaagggcgtgacctg
cgggtgactgcgcaaaccggtagcggcaagaccgcggcttttgtattgccgatcctcaac
cgcctgatcggtccggctcgggtgcgtgtcgatatccgcgccgtgatcctgctgccgacc
cgcgagctggctcagcagaccctcaaggaagtcgagcgtttctcgcagttcaccttcatc
aaggccggcctgatcaccggtggcgaagacttcaaggttcaggccgcgatgctgcgcaag
gtgccggacattctgatcggcaccccgggccgtctgcttgaacacctcaacgctggcaac
ctggacctcaaactggttgaagtgctggtcctcgacgaagccgaccgcatgctggacatg
ggcttctccgaagacgtcgagcgtctggcgggcgaatgtgccgaccgtcagcagaccatg
ctgttctcggccaccacgggcggttctggcctgcgggacatgatccgcaaggtgctgaaa
gacccacagcacctgcagctcaataacgtcagcgagctggccagcggcacccgtcagcag
atcatcaccgctgaccacaacgtccataaagagcagattctcaactggctgctggccaac
gagacttaccagaaagccattgtgttcaccaacaccaaggccatggctgaccgcctgtac
gggcgtctggttgctcaggaatacaaggcgttcgtgctgcacggcgacaaggaccagaaa
gaccgcaaagcggctatcgaccgtctgaagcagggcggcgccaaaatcctggtggccacg
gacgtggctgctcgtggtctggatgtggatggcctggatctggtcatcaacttcgacatg
ccacgcagcggcgatgactatgttcaccgcgttggccgtaccgggcgtgcgggcagtgaa
ggtctggcggtttcgctgatctgccacggtgactggaacctgatgtccagcatcgaacgc
tacctcaagcaaagcttcgagcgtcggaccatcaaggaagtcaaaggcacttacggcgga
ccgaagaaggtcaaggcgtcgggcaaggctgtcggcaccaagaagaaaaagaccgatacc
aagggcgacaagaaaaaagttgccgccaagggaccgaccaagcgcaagtccgtcaaccgt
cccaagtcggattcgctggtaagcaaggacggcatggcgccgttgaagaaacgcagcaca
ccggcacctgcggctgagtaa
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