Pseudomonas cichorii: PCH70_44530
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Entry
PCH70_44530 CDS
T03002
Name
(GenBank) AraC family transcriptional regulator
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
pci
Pseudomonas cichorii
Pathway
pci03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PCH70_44530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pci03000
]
PCH70_44530
03400 DNA repair and recombination proteins [BR:
pci03400
]
PCH70_44530
Enzymes [BR:
pci01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
PCH70_44530
Transcription factors [BR:
pci03000
]
Prokaryotic type
Helix-turn-helix
AraC family
PCH70_44530
DNA repair and recombination proteins [BR:
pci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PCH70_44530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
AHF69606
LinkDB
All DBs
Position
complement(5207164..5208609)
Genome browser
AA seq
481 aa
AA seq
DB search
MKTLDPDVCYAAFIARDRRFDGWFFMGVSTTGIYCRPMCPVRKPLARNCSFYATAAAAEQ
AGFRPCLRCRPELAPGHGLLDVSSRLAQAAARLIDEGFLSGRSLDALSDRVGVTSRHLRR
IFEAEFGVSMIDYSQTQRLLIAKRLLTDTGMSMAEVALASGFGSVRRFNDVFQARYGLNP
LRLRKTTNRGGEASMRFELSYRPPFSWAGVLEFLAHRCIAGVEHVDDESYTRVITVEQAG
RRLAGWLTVSHAPLRHALVVTVSASLQSGIAQVLGRVRRVFDTGCRPDLVDAHLGPLVAG
LPGMRVPGAFEGFEIAVRAVVGQQISVTQARLILGRIAERFGTAVDEAPFGLQHAFPTAE
AIACLAAEDLIATGIIRIRAEAIISVAQEVAAGRIILEPLVPLDETLSALRHIRGIGEWT
VQYIAMRALGWPNAFPEGDAVLKKHLGCATVAQLNEYASQWAPWRAYATVHVWRQREEAK
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactcttgatccagatgtgtgctatgcggcctttatcgcccgggaccgccgtttt
gacggttggtttttcatgggcgtatcgacgaccgggatctattgtcggcccatgtgcccg
gtgcgtaagccactggccagaaattgcagtttctatgcaacggcagcggctgccgagcag
gcgggctttcgtccgtgcctgcgctgccgcccggaactggcacccggccacggcttgctg
gatgtctccagtcgcttggcccaggctgccgcacgcttgatagacgaaggctttttaagc
ggcagaagcctcgatgccctgtctgatcgggttggcgtgacctcgcggcatctgcggcgg
atcttcgaggccgagtttggtgtgtcgatgatcgattattcccagacccagcggctgctg
atcgccaagcgtctgttgaccgatacaggcatgtccatggctgaagtggcgctggcttcc
gggtttggcagcgtcaggcgtttcaatgatgtctttcaggcgcgttatggcctcaacccg
ttgcgcttgaggaagacgacgaaccgaggcggcgaggccagcatgcgtttcgagttgtcg
tatcggccgcctttttcatgggctggcgtgctggagtttctggcgcatcgttgtattgcc
ggggtcgagcatgtggatgacgagtcctatacccgggtgatcacggtcgaacaggcgggt
cgccgtctggccggctggctgacagtgagccatgcgccattgcgccatgctctggtggtg
acggtgtcggcctctcttcagtcggggatcgctcaggtattggggcgcgtgcggcgggtg
ttcgatacgggctgtcggcctgatctggtggatgcccatttaggcccgctggttgccggg
ttgccgggcatgcgtgtaccgggcgctttcgagggtttcgagatcgcggttcgggcggtg
gttggccagcagatatcggtgactcaggcccggttgattctggggcgtatcgccgagcgt
ttcggtacggcggtggatgaggcacctttcgggctgcagcatgcgttcccgacggctgaa
gcgattgcctgcctggctgcggaggatctgattgccacaggtatcatccggattcgtgcc
gaggccattatttccgtggctcaggaagtggcggcagggcgcatcattctcgaaccgctg
gtgcctctggatgaaaccctgtcagccttgcggcatattcgcggcatcggtgaatggacc
gtgcaatatatcgccatgcgcgccttgggctggcccaatgcctttcccgaaggcgatgcg
gtactcaagaaacatctaggctgtgcaacggtcgcccagctcaatgaatacgccagccag
tgggctccctggcgtgcttacgctacggtgcatgtctggcgtcaacgtgaggaggccaaa
aaatga
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