Psychrobacter cibarius: Q6344_01375
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Entry
Q6344_01375 CDS
T09259
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pcia
Psychrobacter cibarius
Pathway
pcia02020
Two-component system
pcia02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcia00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Q6344_01375
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Q6344_01375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcia03021
]
Q6344_01375
Transcription machinery [BR:
pcia03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Q6344_01375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
WLG14036
LinkDB
All DBs
Position
319700..321355
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AA seq
551 aa
AA seq
DB search
MSMSFGLATTLSTSQKLTPQMQQAIKLLQLSSLELAQEVQAKLDSNPLLERIEDDEDEYD
YGSGDRVDESLTLDSWNQSTDIDSFSATSESNTHNSEPDEDFSDSLDKLQQASIDDGAID
NNTMDSDDYSSFESSVDSSNYASTASSSGSKSDEDFDSYQGGTSATIQDHVRWQLNFKHL
SEADMLIATYLIDSMDDMGFVRLDIDELLQSFDTMASFYQWDESVEHDEVMAVLRVIQSC
DPLGVGARNLSECLAIQLSKLDANTDHLKEAQALLSASEHLVSNNIKALTERTGLAPAQI
TPALNLLRTLNPSPGLLFQSSQPDYTQSPASYDIPDVLVTPIRHHQSQTSSDTSTQEDGW
NVRLNPDTMPKLRVNQEYANLVKRGDDSPDNQYLRENLTDARLFIRSIEERNQNLLKVAT
SIVRYQQEFLQHGATAMQPLILKAIAEEVDLHESTVSRLTTSKTILTPQGLFSLKHFFSS
HVSSTDGDISSTAISAMIKQLIADEDAKKPLSDSRIKDCLLSEGIDIARRTVAKYREAMN
IGSSTQRKQKY
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgagtatgtctttcggattggcgaccacgctgagcacctcacaaaaactgaccccgcaa
atgcagcaagccattaaattgctgcaactctctagtcttgagcttgcgcaagaagttcag
gccaagctggatagtaatccattgcttgaacgtattgaggatgatgaagatgaatacgat
tatggcagcggcgatagagtagatgagtcattgacacttgatagctggaaccagagcact
gatattgactcatttagtgcaacctctgagagtaatacccacaactctgaaccagatgaa
gactttagtgatagcttggacaaattacagcaagccagtatcgatgatggtgccatagac
aataatacgatggatagtgacgactatagtagctttgaaagtagtgttgatagcagtaat
tatgcatctacggcaagcagttcggggagcaaaagtgacgaggattttgacagttatcaa
ggcggcacttctgccaccatacaagatcacgtgcgctggcagctgaactttaagcatctc
tcagaagcggacatgttgattgcaacctatctgatagactctatggatgacatgggtttt
gtgcggcttgatatcgatgagctgttgcaaagcttcgatactatggcaagtttttatcaa
tgggatgaatctgttgagcacgatgaagtcatggctgttttacgtgttattcagtcttgc
gatccgctgggtgtcggggcgcgaaatctcagtgagtgcctagcgattcaattgtccaag
ctcgatgcaaatactgaccatctaaaagaagcgcaagcattattgtcagccagtgagcat
ttggtgagcaataacatcaaagcattgactgagcggactggactcgcgcctgcacagatt
acccccgcgcttaacttactgcgtaccttgaatccgtcacctggcttgctgtttcaaagc
agccaaccagactatactcagtcgccagccagctatgatattcctgatgttttggtcacg
cctatacgtcaccatcagagtcagacgagttcagatacatcgacgcaggaggacggctgg
aatgtgcgcctcaatcctgacaccatgccaaagctaagagtcaatcaagaatatgccaat
ttggtgaagcgcggtgatgacagccccgacaatcaatatctgcgtgaaaacctcaccgat
gcccgcttgtttattcgtagtattgaagagcgtaatcaaaacctattaaaagtggcaacc
agtatcgtgcgttatcagcaagagttcttgcagcatggcgcgactgcgatgcaaccgctc
atcctaaaagccattgcggaagaagtggatttgcacgaatcgaccgtctcgcgtctaacc
accagtaaaacaattttgacgccgcagggattattttcactcaagcatttcttttcatct
catgtcagcagtaccgacggcgatatttcatcgactgccattagcgccatgattaagcaa
ttgatagccgacgaagatgccaaaaagccattatctgacagtcgcataaaagattgttta
ttatcggaaggtatcgatatcgccagaagaaccgtggctaaatatcgtgaagcaatgaat
attggctcgtctactcagcgtaaacagaaatattaa
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