Psychrobacter cibarius: Q6344_05845
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Entry
Q6344_05845 CDS
T09259
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pcia
Psychrobacter cibarius
Pathway
pcia02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcia00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Q6344_05845 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcia03021
]
Q6344_05845 (rpoD)
Transcription machinery [BR:
pcia03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Q6344_05845 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WLG14857
LinkDB
All DBs
Position
complement(1380570..1382486)
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AA seq
638 aa
AA seq
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MNDKSVSKSTSQLATLIQMGKEQGYLTYAEVNDQLPDSITESDQIEDIVQMLTDVGIKIF
ESAPDADDILMNDDSSDDDMAADEAAAVLASVETEPGRTTDPVRMYMREMGTVDLLTREG
EIAIAKRIEEGIRDVQHAMSYWPGTVQFVLDEYQKVQDGEKKLSDVITGFLDPETEADKI
AAQEAKEAAKEERERIKEEKENPPVIKAKAKAAALDDEDEDEDDVEEEAEEETSGIDPEE
VRLRLEEIEHLFIKAKQALLDYGRGSTEADTAYALLAERFMMLKLNNRLSDQVMAIMHDV
YDDVRKQERQIMRLVIRRGRMPREEFRKTFPSNETNVDWLIERIKGKPAFAGTLEKVTDD
VILLQRRIRDYEQQLDMKIHDMKDVARRMAVGEAKARRAKKEMVEANLRLVISIAKKYTN
RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM
IETINKINRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDED
SHLGDFIEDGTISSPVDDATAAGLREATRDVLGNLTEREARVLKMRFGIDMPTDHTLEEV
GKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLEND
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgaacgataagtcagtttctaagtccacatctcaactggccaccttaatccaaatgggt
aaagagcaagggtatcttacctatgctgaggtgaatgaccaactgcccgactctattacc
gaaagcgatcagatcgaagatattgtgcaaatgctgaccgacgttggtatcaaaatcttt
gaatctgcgcctgatgccgatgacatcttgatgaacgacgattcaagtgatgatgacatg
gcagcggatgaggcagcggcggtattggcctctgttgagactgagccgggtcgcaccact
gaccctgtgcgtatgtatatgcgtgaaatgggtacggttgatctattgacccgtgaaggt
gagatcgccattgccaagcgtatcgaagaaggcattcgtgacgtacagcatgcgatgtct
tactggccgggtaccgtacagttcgtccttgatgagtatcaaaaagtacaagatggcgaa
aaaaagctttctgacgtcattactggctttttagatcctgagaccgaagcagacaaaatc
gctgcccaagaagcaaaagaggcagcaaaagaagaacgtgaacgcataaaagaagagaaa
gaaaatccacctgtgatcaaagcaaaagccaaagcagcggcgcttgatgatgaggacgag
gatgaagacgacgttgaagaggaagctgaagaagaaaccagcggtatcgatcctgaagaa
gtacgtctgcgtctagaagaaatcgaacacttatttattaaagccaagcaagccttgcta
gattatggccgtggtagcacagaagcagatactgcttatgctctacttgccgaacgcttt
atgatgctcaagctaaacaatcgcttgtcagatcaagtcatggccatcatgcatgatgtc
tatgatgatgtgcgtaagcaagaacgtcaaatcatgcgtttggtcattcgccgtggtcgt
atgccgcgcgaagaattccgtaagactttccctagcaacgaaaccaacgttgattggctg
attgagcgcatcaaaggcaaacctgcatttgctggtacgctagaaaaagtcactgatgat
gttattttattgcaacgtcgcattcgtgactacgagcaacagctcgacatgaaaatccac
gatatgaaagacgtcgcgcgccgtatggcagtcggtgaagcaaaagctcgccgcgccaaa
aaagaaatggtcgaagctaacctgcgtttggttatttctatcgcgaagaaatataccaac
cgtggtctacagttcttggacttaatccaagaaggtaacatcggtctgatgaaagcggtt
gataaatttgaataccgccgtggttataagttctcgacctatgcgacatggtggattcgt
caggcgattacccgctctatcgctgaccaagcgcgtaccattcgtattcctgtacatatg
atcgagacgattaataaaataaaccgtgtatctcgtcaattgctacaagaaatgggacgc
gagccaacacctgaggaattaggtgaacgcttagagatggacgaagttaaagtccgtaaa
gtactgaaaatcgccaaagagcctatttcgatggaaacccctatcggtgatgatgaagat
tcacacctaggtgatttcatcgaagatggtactatctcaagccctgttgatgatgcgacc
gcagctggtctgcgtgaagcgactcgtgatgtattgggcaatctgactgagcgtgaagca
cgcgtactaaaaatgcgctttggtatcgacatgccaactgaccataccttggaagaagta
ggtaagcagtttgacgtaacacgtgagcgtattcgtcagattgaggcaaaagcactgcgt
aaattgcgtcatccgtcacgttctgagcatctgcgttcgttcttagagaatgattaa
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