Psychrobacter cibarius: Q6344_08935
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Entry
Q6344_08935 CDS
T09259
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pcia
Psychrobacter cibarius
Brite
KEGG Orthology (KO) [BR:
pcia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcia03016
]
Q6344_08935
Enzymes [BR:
pcia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Q6344_08935
Transfer RNA biogenesis [BR:
pcia03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Q6344_08935
Prokaryotic type
tRNA splicing ligases
Q6344_08935
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
WLG12731
LinkDB
All DBs
Position
2152261..2153532
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AA seq
423 aa
AA seq
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MTINKLCNAKEHNMQPTTHHIIQDGGTPIRLWTKGVPVDPKAHEQLIKASKMPFVYKWLA
VMPDVHVGIGATIGTVLPTKDAIIPAAVGVDIGCGMMAVQTTLTANDLPDSLLGLRTELE
KAIPHGRSKTRGRGSRRDVGAWANPDDTVMNGWGTLVDDFNYITQKHPKLKNTNNLNHLG
TLGTGNHFVEVCLDETNQVWIMLHSGSRGVGNAIGRYFIELAREDMRKWFINLPDKDLAY
FAEGTEHFDDYWFAVGWAQRFAFKNREIMMEKAIKALRHIIPKPFDAAVKAVNCHHNYVA
KEEHYGEEVFVTRKGAVRARVGEYGIIPGSMGAKSFIVRGKGNEESFCSCSHGAGRIMSR
TEAKKVFTVADQIAQTAGVECRKDVDVIDEIPAAYKNIDDVMQAQSDLVEVVHTLRQVVC
VKG
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgactataaacaaactttgcaatgctaaggaacataacatgcaaccaactactcatcat
attattcaagacggtggaacgcctatcagactttggaccaagggcgtacccgttgaccca
aaagcacacgagcaattgatcaaagcctcaaaaatgccgtttgtatataaatggcttgcg
gtgatgcccgatgtacacgttgggattggcgcgacgatcggtacggtattgcccaccaaa
gacgcgatcattccggctgccgttggtgtcgatattggctgcgggatgatggcagtgcaa
actactctaaccgcaaacgatttgccagatagtttgcttggtctgcgtacggagcttgaa
aaagcgattccacatggtcgtagtaaaacgcgtggtcgcgggtcacgccgtgatgtcggt
gcatgggcaaaccctgacgacacggtaatgaacggttggggaacgctggttgatgacttt
aattatataactcaaaagcaccctaaacttaaaaataccaataaccttaatcatttgggt
acgctgggtacgggtaaccatttcgtcgaggtgtgccttgatgaaaccaaccaagtttgg
atcatgttgcactcaggctcacgcggtgtgggtaatgccatcggacgctactttattgag
ctggcacgtgaggacatgcgcaagtggtttatcaacttgccagataaagatttggcctac
tttgccgagggtacagagcactttgatgattattggtttgcggttggttgggcgcagcgt
tttgcctttaaaaaccgcgaaatcatgatggaaaaagcgattaaagccctacgtcacatc
atacctaagccgtttgatgctgcggtaaaagcggtgaactgtcatcacaactatgtggct
aaagaagaacactatggcgaggaagtatttgtgacccgtaaaggcgcagtgcgtgcccgt
gttggtgaatacggaattattccggggtcaatgggtgccaagtcatttatcgtgcgcggt
aaaggaaacgaagaatcgttttgctcttgctcgcatggcgcaggtcgtatcatgtcacgt
actgaggcgaaaaaggtatttacagtcgccgatcaaattgcacagactgcgggcgtagaa
tgccgaaaggacgtggatgtgattgatgagattccagcggcttataaaaatattgatgat
gtgatgcaagcacaaagtgatttggtagaagtggtacataccttgcggcaggtggtttgt
gttaaaggttaa
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