Psychrobacter cibarius: Q6344_12790
Help
Entry
Q6344_12790 CDS
T09259
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pcia
Psychrobacter cibarius
Pathway
pcia03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcia00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Q6344_12790 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcia03021
]
Q6344_12790 (rpoB)
03400 DNA repair and recombination proteins [BR:
pcia03400
]
Q6344_12790 (rpoB)
Enzymes [BR:
pcia01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q6344_12790 (rpoB)
Transcription machinery [BR:
pcia03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q6344_12790 (rpoB)
DNA repair and recombination proteins [BR:
pcia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q6344_12790 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RelB
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
WLG13462
LinkDB
All DBs
Position
complement(3008821..3012939)
Genome browser
AA seq
1372 aa
AA seq
DB search
MAYSYTEKKRIRKSFAELPTVMDIPYLLSIQVDSYEQFLQEHKKPKARENTGLQAAYSSI
FPIESHSGNAELQFVEYYLGTPEFDERECILRGSTFAAPMRVKIRLIIKDKDSKDKDSKA
AIKDIREQSVYMGEMPLMTANGTFIINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLY
NARIIPYRGSWLDFEFDAKDLVFARIDRRRKLLASIILRALGLTTSEILDLFFDKVAVYK
GEEQFEIDLVADRLRGEMAQFDIVSPEGDVIVEQGKRINARRIRQLEEAGMTKIAIPDEY
LYERILAEDIVVNDEVIAKANTLIDHELLVKLSAFEASESIKEFSILFTNDIDQGSYIAD
TLRADSTSSREEALIEIYKVMRPGEPPTVETAEKLFDSMFFNADRYDLSNVGRMKFNRRL
GLEFDNTDDPDIQRARSVLTNADIVNVLKELIEIRNGRGEVDDIDHLGNRRIRSVGEMAE
NQFRVGLVRVERAVKERLSSAESDNLSPQDLINSKPVAAAVKEFFGSSQLSQFMDQNNPL
SEVTHKRRVSALGPGGLTRERAGFEVRDVHDTHYGRVCPIETPEGPNIGLINSLATFAKT
NSFGFLETPYRRVVDGKVTDVIEYLSAIEEVGTVIAQADSPVTAEGALSDEMVSVRSYGE
FVRMPPEKVTHMDVSPSQVVSVAAGLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVG
TGMERHVARDSGVCVIAKRGGVIEDVDASRVVVRVNEDEMIAGEAGIDIYNLVKYTRSNQ
NTCINQRIIVNQGDAIAVGDILADGPSTDLGELALGQNIRIAFMPWNGYNFEDSILLSEK
VVKEDRFTTIHIQELTCVARDTKLGTEEITADIPNVGEAALSSLDEAGIVYIGAEVDAGD
ILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDTSLRVPTSSKGTVIDVQVFTRDGVEK
DARARAIEKSQLDSYRKDLKEELRIFEEAARGRIGNLLDGQKVSGGSGLKAGTVMALADM
KDMSLETLLDIQPVEEEISERLTQIAEYLVDKQKDIDVKFAEKKRKLTAGDDLQHGVQKI
VKVYLAVKRRIQPGDKMAGRHGNKGVVSRIMPVEDMPYDENGNTVDIVLNPLGVPSRMNI
GQVLETHLGMAAKGLGEKIDGMLKSQAAIKDLRDFLDKIYNQVGGEQVDLDSLSDDDIMA
LADNLRAGVPMGTAVFDGARESQVKDLLELAGMDRDGQQTLYDGRTGQKFDRKVTVGYMY
MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGATYTLQEML
TVKSDDVEGRTRMYKNIVDGEQYMDPGMPESFNVLTKEIKSLGINIELKQTH
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggcatattcttatactgaaaaaaagcgtattcgcaaaagttttgctgaattgcccact
gtgatggacattccctatttactgtctattcaagtagattcttacgagcaatttttgcaa
gagcacaaaaagccaaaagctcgtgagaatactggtttgcaagctgcgtattcctctatt
ttcccaattgagagtcactctggtaacgcagagctacaattcgttgaatattatttaggc
acgcctgaatttgacgagcgtgagtgtatcttgcgtggctcaacgtttgctgcaccgatg
cgtgtcaaaatccgtctgatcattaaagacaaagacagcaaagacaaagacagcaaagcg
gctatcaaagatattcgtgagcaaagtgtctatatgggcgagatgcctttgatgacagct
aacggtacttttattatcaatggtactgagcgtgttatcgtctctcagctacatcgttca
cctggtgtgttctttgatcatgataaaggtaagtcgcattcaagtggtaaagtgctttat
aacgcacgtattatcccttaccgtggttcatggttagattttgaatttgatgccaaagac
ttagtttttgctcgtattgaccgtcgtcgtaagctattggcttcaattattttacgtgcg
cttggtctaacaacgtctgaaatcttagatttgttctttgataaagtagccgtttataaa
ggtgaagagcagttcgagattgatctggttgctgatcgcttgcgcggtgagatggctcag
ttcgatatcgtatcaccagaaggtgatgtcatcgtagagcagggcaagcgtattaatgca
cgccgtattcgtcagcttgaagaagcaggtatgacgaagattgcgatacctgatgagtat
ctctatgagcgtattttagctgaagatatcgtggtgaatgacgaagttatcgctaaagcg
aataccctaattgaccatgaattattggttaaattaagtgcatttgaagccagcgagtct
atcaaagaattcagcattctattcaccaatgatatcgatcaaggcagttatattgccgac
actttgcgtgctgatagtacgtcaagccgtgaagaagcattgattgaaatctataaagtc
atgcgtccaggtgagccaccaacggttgagaccgctgaaaaactatttgacagcatgttc
tttaacgctgatcgttatgacttatcgaacgtcggtcgtatgaaatttaaccgtcgttta
gggttagagtttgataatactgatgatccagatatccaacgcgctcgtagcgtattgacc
aatgccgatatcgttaatgtcctaaaagaattgattgagattcgtaatggtcgcggcgaa
gtcgatgatattgaccatttaggtaaccgccgtattcgttcggttggcgagatggcagaa
aaccaattccgtgttggtctagtacgtgtcgagcgtgcagtcaaagagcgtttaagctca
gcggaatctgataacttgtcaccacaagatttgattaactcaaaacctgttgctgctgcg
gtcaaagaattctttggttcaagccagttatcgcagtttatggatcagaacaatccattg
tctgaagttacccataaacgccgtgtctcagctctaggacctggtggtctgacccgtgaa
cgtgcaggctttgaagtacgtgacgtacatgatacccattatggtcgcgtatgtccgatt
gaaactcctgaaggtccaaacattggccttattaactcattagcaacttttgctaaaacc
aacagctttggcttcttagaaacgccttatcgccgtgtggttgatggtaaagtaactgat
gtcattgagtatctatcagcgattgaagaagtaggtacggtcattgcacaggctgattca
ccagtaaccgcagaaggcgcgttatctgatgagatggtcagtgtacgtagctatggtgaa
tttgtccgtatgccaccggaaaaagtgacgcatatggacgtgtcgccaagtcaggttgta
tcggtagctgctggtctaattccattcctagagcatgatgatgctaaccgagcgcttatg
ggctcgaacatgcagcgtcaggcagttcctacgctacgtgctgataagccgttagtaggt
acgggcatggagcgtcacgttgcgcgtgactcaggtgtttgtgtgatcgctaagcgtggc
ggtgtgatcgaagatgttgatgcctcacgtgttgtggttcgtgtcaatgaagatgagatg
attgctggtgaagctggtattgatatctataacctcgttaaatacacgcgttctaaccaa
aatacttgtatcaaccaacgtattatcgtcaaccaaggtgatgctattgctgtaggtgat
atcttggctgatggtccgtcaacggatcttggtgagcttgcattgggtcagaacattcgc
atcgcatttatgccatggaatggttacaacttcgaagattcaatcttgctgtctgaaaaa
gtggttaaagaagatcgtttcacgaccattcatatccaagaattgacctgtgtggcacgt
gataccaagctaggtactgaagaaattaccgccgatattccaaacgttggcgaagcggcg
ctatcaagtcttgatgaagcaggtatcgtttatatcggtgctgaagttgacgctggtgat
atcttagttggtaaagtgacgccaaaaggtgaaacacaactgacgccagaagagaaattg
ctccgggctatctttggtgaaaaagcggctgatgttaaagacacgtcgctacgtgtacca
acatcaagcaaaggcacggttattgatgttcaagtctttactcgtgacggcgttgaaaaa
gacgcacgtgcaagagcaattgaaaaatcacagcttgatagctatcgtaaagatttaaaa
gaagagctacgtatctttgaagaagcagctcgtgggcgtattggtaacttgttagatggt
caaaaagtcagcggtggttctggtctaaaagccggtacagtgatggcattggctgatatg
aaagatatgagccttgagaccttactggatatccaaccagttgaagaagaaatctctgag
cgtctaacgcaaatcgctgagtatttggttgataagcaaaaagatatcgatgtgaagttt
gctgagaaaaaacgcaaattaaccgctggtgatgacctacaacatggcgtacaaaaaatc
gttaaggtatatctagcggttaagcgtcgtattcagcctggtgataaaatggctggtcgt
catggtaacaaaggtgtggtatcgcgcattatgccagttgaagacatgccttatgatgaa
aatggtaataccgttgacatcgtcttgaacccacttggtgtaccatcgcgtatgaacatc
ggtcaggttctagaaacgcatttgggtatggcagcgaaaggtttgggcgagaagatcgat
ggtatgctcaaatcgcaagcagcgatcaaagatttacgtgacttcttagacaaaatctat
aaccaagtcggcggtgagcaagttgatcttgatagcttgagtgatgatgacatcatggcg
ctagcagataacttgcgcgctggtgtaccaatgggcacagcagtatttgacggcgcaaga
gaaagccaagttaaggatctgttagagcttgctggtatggatcgcgatggtcaacagacg
ttgtatgatggtcgtactggtcagaagtttgatcgtaaagtaaccgttggttatatgtac
atgctgaaacttaaccatttggttgacgacaaaatgcatgcgcgttcaaccggttcttac
tcattagtgacgcagcagccactcggcggtaaagctcagtttggtggtcagcgcttcggt
gagatggaagtgtgggcactagaagcttacggcgcgacttatacgctacaagagatgctg
actgtgaagtcggatgacgttgaaggccgtacgcgtatgtacaaaaacatcgttgatggt
gagcagtatatggatccaggtatgcctgaatcgtttaacgtactgaccaaagaaatcaaa
tcattgggtattaatattgagttaaaacaaacccattaa
DBGET
integrated database retrieval system
