Psychrobacter cibarius: Q6344_13435
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Entry
Q6344_13435 CDS
T09259
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pcia
Psychrobacter cibarius
Pathway
pcia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q6344_13435 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcia03021
]
Q6344_13435 (rho)
03019 Messenger RNA biogenesis [BR:
pcia03019
]
Q6344_13435 (rho)
Transcription machinery [BR:
pcia03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Q6344_13435 (rho)
Messenger RNA biogenesis [BR:
pcia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Q6344_13435 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
AAA
OB_RNB
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
WLG13579
LinkDB
All DBs
Position
3164277..3165545
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AA seq
422 aa
AA seq
DB search
MNLTELKKKSIAELLAIAKEMGLDNMARSRKQDIIFAILKTHARNGEAIYGDGVLEVLPD
GFGFLRSSEGSYLAGPDDIYVSPSQIRRFSLKTGDSIAGTIRPPKDSERYFALLKVGEIN
FDTPDRSRHKLIFENLTPLFPTEHLKLELGNGTTEDLTGRIIDLIAPIGKGQRSIIVAPP
KAGKTMLLQTIAQSITRNNPECYLIVLLIDERPEEVTEMVRTVRGEVVASTFDEPPQRHV
QVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVIPSSGKVLTGGLDANALERPKRF
FGAARNVEEGGSLTIIASALIDTGSKMDSVIFEEFKGTGNQEITLERDLAEKRVFPAINI
KKSGTRREERLLDEDKLRKVWILRKLLQPMDGVQATEFLLDRLKEAKTNDEFFEQMKRKS
QN
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttactgaattaaagaaaaaatcaatcgctgagctattggctatcgccaaagaa
atgggtcttgataatatggcgcgtagccgtaaacaagacatcatctttgctatcctaaaa
acccatgcgcggaacggtgaagccatttatggtgacggcgtacttgaggttcttccggat
ggttttggctttttacgctcatcagaaggctcatacttagccggtcctgatgacatttac
gtcagccctagccaaattcgtcgctttagtctgaagacgggtgacagtatcgctggtacg
attcgtccaccaaaagattctgaacgttattttgcgttattaaaagttggcgaaatcaac
tttgataccccagatcgctcacgtcataagcttatctttgaaaacctgacacccctattc
ccaactgagcatttgaaactcgagcttggtaacggtaccactgaagatttgacgggtcgt
atcatcgatctaatcgcgccgattggtaaaggtcagcgctctatcatcgtcgcaccgcca
aaagcgggtaaaacgatgctgctacagaccatcgcgcagtcgatcactcgtaataaccct
gaatgctatctcatcgtcctattaattgatgagcgtccagaagaagtcaccgaaatggta
cgtacggtacgcggtgaagtggttgcctctacctttgatgagccgccacagcgtcatgta
caagtcgctgaaatggttatcgaaaaagccaaacgtttggtcgagcacaaacaagacgtg
gttattttactggattcaattactcgtttggcgcgtgcttataacacagttattccgtcg
tcaggtaaagtgttgactggtggtctagacgccaatgcgttagagcgcccaaaacgcttc
ttcggtgctgcgcgcaatgtcgaagaaggtggcagtttgaccattattgccagtgccctt
atcgatacgggtagtaaaatggacagcgttatctttgaagaattcaaaggtactggtaac
caagagattacccttgagcgcgatctggctgaaaaacgtgtcttccctgcgattaatatc
aaaaaatctggtacacgccgtgaagagcgtctgcttgatgaagataaactgcgcaaggtt
tggattttacgcaagctattacagccgatggatggcgtacaagccactgagttcttgttg
gatcgcttaaaagaagcgaaaaccaatgatgaattctttgagcagatgaaacgtaaatca
cagaactaa
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