Psychrobacter cibarius: Q6344_14180
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Entry
Q6344_14180 CDS
T09259
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pcia
Psychrobacter cibarius
Pathway
pcia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q6344_14180 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcia03019
]
Q6344_14180 (rnr)
03016 Transfer RNA biogenesis [BR:
pcia03016
]
Q6344_14180 (rnr)
Enzymes [BR:
pcia01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Q6344_14180 (rnr)
Messenger RNA biogenesis [BR:
pcia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q6344_14180 (rnr)
Transfer RNA biogenesis [BR:
pcia03016
]
Prokaryotic type
tRNA degradation factors
Q6344_14180 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
MarR
PheRS_DBD1
Motif
Other DBs
NCBI-ProteinID:
WLG13701
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All DBs
Position
3330997..3333291
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AA seq
764 aa
AA seq
DB search
MSWNDPNASSEAKRYDNPIPSRELILSTINEHGEVTHQQLAKAFNIDDPDQFDALGNRLK
AMARDGQVNRDGRPYRYRTVTKQDVVRGTVSAHPKGFGFVLLSDMPDLFLHEKQMRWVFN
GDTVDAVGTSTDNRGRTEGRIVDVVERRQNNFIGTLARDEDGYCVELGSPNNHQPITVTE
ENVQAMNAKQGSPVKVDVIDWPNQHEFATGKITEVLSDDNDRELIIETTLLNYDIPSDFS
EAALKQANDYQEPTEKDLKGRTDLRDLPLVTIDGEDARDFDDAVFAEKRSGGNYRVLVAI
ADVSYYVTPNSPLDKDAYERGTSVYFPHRVIPMLPEVLSNGLCSLNPDRDRLCMVADIKI
SRAGKVTGYEFYPAVMHSQARLTYNQVNAYLENPEDKSVPTSLTGNKDVKKSVDTLHQLY
ELLLKKREERHAMEFETVETYIKFNEKGGIEAILPRTRGDAQKLIEECMLLANTCAANFA
LKHELPVLYRNHDKPDGEKSMRIHEYAKNFGLSFPEENPTQADYQRIIEATKDRPDAISI
HSMLLRSMMQANYAPDNIGHFGLAYDEYSHFTSPIRRYPDLMLHRAIKAKVTNTQQPVMD
FSLEAAGTQTSDTERRAEKASRYVESWLKCHYMKDHVGEEFEGVVTTVTSFGLFVTLTDL
YIDGLVHISNVGDDFFVYDEQQQQLIGKDKGTLFGLGDRVKVKVAGVNMDLLQIDFDLKA
KLQSSEMNQTKSAPSKKSTDKKSTDRRSPAKKTGSRSKGASKKS
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgagttggaacgatccaaacgcctcaagtgaggcaaaaagatatgacaatcctatccct
agtcgcgaactgatactcagtacgattaatgagcatggtgaagtcacgcatcaacaattg
gcaaaagcctttaatattgatgacccagaccagtttgacgctttaggcaatcgcctaaaa
gcgatggcacgtgatggacaagtaaaccgcgacggtcgtccttatcgctatcgcacggtg
accaagcaagatgtcgtcagaggtacagtgtctgcacatcctaaaggctttggctttgta
ttattaagcgatatgccagatttgtttttacatgaaaagcaaatgcgctgggttttcaac
ggtgacactgtagatgcagtcggtacatcgacagacaatcgcgggcgcacagaaggacgt
atcgtcgatgtcgttgaacgtcgtcaaaataacttcattggtacattagcgcgtgatgaa
gacggctactgtgtcgagcttggtagtccaaataatcaccagccgattaccgttactgaa
gaaaatgtacaagcgatgaatgccaagcaaggctctcctgttaaggttgatgttattgat
tggccaaatcagcatgaatttgcgacgggtaaaatcactgaagtactgtctgatgacaat
gatcgcgaactgattattgagaccaccttacttaattatgatatcccatcagattttagc
gaagcagcactgaagcaagccaacgattatcaagagccgactgaaaaagatttaaaaggt
cgtacagatttgcgtgatttgccgctggtgactatcgatggtgaagatgcacgtgatttt
gatgatgccgtatttgctgaaaaacgctctggtggcaactatcgtgtcttagttgcgatt
gctgatgtcagttattacgtcacaccaaactcgccacttgataaagatgcctacgagcgc
ggtacgtccgtatactttccacatcgcgtgattccaatgttgccagaagtactctctaat
ggtctgtgctcactaaatcctgaccgtgatcgtctttgtatggtagctgatatcaaaata
tcgcgggcaggcaaagtgaccggttatgagttctatcctgctgtcatgcactcacaagca
cgcttaacgtataatcaagtgaacgcttatcttgagaatccagaagataagagcgtacct
acctcactaacgggtaataaagacgtcaaaaaatctgtcgataccttacatcaattgtat
gagctactgcttaaaaagcgtgaagagcgtcatgcaatggagtttgaaacagttgagaca
tacattaaatttaatgagaaaggtggtatcgaagcaatcctaccgcgtactcgcggtgat
gctcaaaaactcattgaagaatgtatgctgctggccaatacttgtgcagcgaactttgca
ctcaagcatgagcttcctgtcttatatcgtaaccatgacaaacctgatggcgaaaaatca
atgcgtattcacgaatacgcaaagaactttggtttaagcttcccagaagaaaatccaacg
caagccgattatcagcgcattattgaagccaccaaagacagacccgatgcaattagtatc
cacagcatgctgttgcgctcaatgatgcaagcaaactatgcacctgacaatatcggtcac
tttgggctagcttatgacgaatatagccacttcacctcgccgattcgtcgttaccctgat
ttgatgctgcatcgtgccatcaaagcaaaagtgaccaatactcagcagccagtgatggac
ttttctctcgaagctgctggtacgcaaacctcagatactgagcgccgtgccgaaaaagcc
tcacgctatgtagagtcttggctcaagtgtcactatatgaaagatcatgttggtgaagag
ttcgaaggtgtggtcactacagtcacaagcttcggtttgtttgttaccttgactgactta
tatattgatggtttggttcacatctctaatgttggtgatgacttctttgtttacgatgag
cagcaacaacagctgatcggtaaagacaaagggacattattcggactgggcgatcgcgtt
aaagtgaaagttgctggcgtcaatatggatctgctacaaattgactttgatttaaaagct
aaattgcaatctagtgaaatgaatcaaacgaagagcgcgccttctaaaaaaagtactgat
aagaaaagtactgatagaagaagccccgctaaaaagactggcagccgtagtaaaggcgca
agtaagaaaagctag
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