Proteus terrae subsp. cibarius: F9282_01230
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Entry
F9282_01230 CDS
T06330
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pcib
Proteus terrae subsp. cibarius
Pathway
pcib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F9282_01230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcib03019
]
F9282_01230
03016 Transfer RNA biogenesis [BR:
pcib03016
]
F9282_01230
Enzymes [BR:
pcib01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
F9282_01230
Messenger RNA biogenesis [BR:
pcib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F9282_01230
Transfer RNA biogenesis [BR:
pcib03016
]
Prokaryotic type
tRNA degradation factors
F9282_01230
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QGW01689
LinkDB
All DBs
Position
239647..242142
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AA seq
831 aa
AA seq
DB search
MSKDPFQDREAEKYASPIASREYILEEMKKRTAPMSRDDLAQALKISGEEDLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLWKGKVIGHRDGYGFLRAEGQKDDLYLSQDEMKKTMH
GDVILAQPLGMDRKGRREGRVVRVIEPRNNQIVGRYFIESGMGFVVPDDSRLSFDILIPK
EDIMGARMGNVVVVEITTRPTRRTQAVGRIVEILGETMGTGIAVEIALRTHEIPYTWPAK
VTKEVADLKEEVPESAKEGRVDLRGLPLITIDGEDARDFDDAVYCQRKKGGGWRLWVAIA
DVSYYVRPQTALDTEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
EQGRLSSYKFYEAVMSSHARMTYTKVWKIIQGDEELREHYKPIVKDIEHLYELYQVLDKA
REQRGAIGFESEEAKFIFNAERRIERIEPVVRNDAHKLIEECMILANIAAARFVEKNEEP
ALYRIHDKPKEDSVLNLRSVFNELGLTLPGGLTPEPADYARVMKEVEDRPDREMLQTMIL
RSMKQAIYDPENRGHFGLALKSYAHFTSPIRRYPDLALHRAIKYQIAKQEGHGSQRWTPT
GGYHSDMDTMLQLGEHCSLTERRADEATRDVADWLKCDFMLDQIGQQFTGIITSVTGFGF
FVRLNDLFIDGLVHVSTLNNDYYQYDNVGQRLIGESSGQVYRLGDEVEVKVEAVSMDERT
IDFSLISTTRTARNPGKTARVRGLKGEKDKKNASSSKSRRRDVSKDKNFEPDSAFKKGKS
SSGRGNASKDKAVKDQVAKDKASSKRKKASSQTKKIEAKLKAKRAAKRDNA
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttttcaggatagagaagcagaaaaatacgcctctccaattgctagt
cgcgaatatatcttagaagaaatgaaaaaacgcacggcaccaatgagccgtgacgattta
gcacaggcgttaaaaatttcaggtgaagaagacttagaagcgttacgtcgccgtttaagg
gcgatggagcgtgatggtcaattagtttttacccgtcgccagtgctatgcattacctgaa
cgtcttgatttatggaaaggtaaggtaatcggtcaccgtgatggttatggttttttacgt
gcagaaggtcaaaaagatgacctttatctttcacaagatgaaatgaaaaaaaccatgcat
ggtgatgttatccttgcccaacctttaggtatggatagaaaaggtcgtcgtgaaggtcgt
gttgttcgtgttattgaaccaagaaataaccaaattgtaggtcgttattttattgagtca
ggtatgggatttgttgtacctgatgatagtcgtttaagctttgatattcttatccctaaa
gaggatatcatgggcgcgcgtatgggaaatgtggtggtggttgagatcacgacaagacca
actcgacgcacgcaagcagtaggtcgtattgttgagatcttaggtgaaaccatgggaaca
ggtattgcggtagaaatcgcattacgtactcatgagatcccgtatacctggcctgcaaaa
gtgacaaaagaagttgctgatttaaaagaggaagtgcctgaatcagctaaagaagggcga
gttgatttacgtggcttacctttaattactattgacggtgaagatgcgcgagactttgat
gacgccgtttattgtcaacgtaaaaaaggtggtggttggcgtttatgggttgcgattgca
gatgttagttattatgtgcgtccacaaaccgcgttagatacagaagcgcgtagccgagga
aattctgtttatttcccttctcaagtagtgccaatgttaccagaagttctgtctaatggc
ttgtgctcattaaacccacaagttgaccgtttatgtatggtctgtgagatgaccgtttct
gagcaagggcgtctttcctcttacaaattctatgaagcggtgatgagttctcatgctcga
atgacctacaccaaagtgtggaaaatcattcaaggtgatgaagaactgcgtgagcactat
aagcccatcgttaaagatattgagcatctgtatgagctataccaagtattagataaagca
cgcgaacagcgcggtgcaattggttttgaatcagaagaagcgaagtttatctttaatgcc
gagcgtcgcattgagcgtattgagcccgttgttcgtaatgatgcacacaaattgattgaa
gagtgcatgatccttgctaatatcgcagccgctcgttttgttgagaaaaacgaagaacct
gcactttaccgtattcatgataaacccaaagaagatagcgtcttgaatctacgctctgtc
tttaatgaattaggtttaacgctgcctggcggattaacaccagagccagcagattatgca
cgtgtcatgaaagaggttgaagacagacctgatcgtgaaatgctacaaaccatgattttg
cgctcaatgaaacaggcaatttatgatcctgaaaatcgtgggcactttggtttagcatta
aaatcttatgcgcactttacctcgccaattcgtcgttaccctgatttagccttgcaccga
gcaattaaatatcaaattgccaaacaagagggtcatggctcacaacgttggaccccaacg
ggtggctaccatagtgatatggacaccatgttgcaattaggcgagcactgttctttaact
gagcgccgtgctgatgaagcaacacgagatgttgctgattggctaaaatgtgactttatg
ctggatcaaattggtcaacaatttaccggtattatcaccagcgtaacgggctttggtttc
tttgttcgtttaaatgatctgtttattgatggtctggtgcatgtttctacattaaataat
gattattatcagtatgataatgtagggcaacgcttaattggtgagtcttcaggacaagtc
tatcgccttggtgatgaagttgaagtgaaagttgaagcagtgagtatggatgaacgcact
atcgacttctctttaatttcaacaacacgcaccgcgcgtaatccgggtaaaacagcccgt
gttcgtggtttaaaaggtgaaaaagacaagaaaaacgcaagttctagtaagtctcgccgt
cgtgatgtaagcaaagataaaaactttgagccagatagtgccttcaaaaaaggtaaatca
tcatcaggtcgaggtaatgcgagcaaagacaaagccgtaaaagaccaagttgcgaaagat
aaagcaagtagcaaacgtaagaaagcatcatcacaaaccaaaaagatagaggcaaaactt
aaagctaaacgcgcagccaaacgcgataacgcataa
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