Proteus terrae subsp. cibarius: F9282_07495
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Entry
F9282_07495 CDS
T06330
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pcib
Proteus terrae subsp. cibarius
Pathway
pcib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F9282_07495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcib03019
]
F9282_07495
03009 Ribosome biogenesis [BR:
pcib03009
]
F9282_07495
Enzymes [BR:
pcib01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F9282_07495
Messenger RNA biogenesis [BR:
pcib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F9282_07495
Ribosome biogenesis [BR:
pcib03009
]
Prokaryotic type
rRNA processing factors
F9282_07495
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
QGW02835
LinkDB
All DBs
Position
complement(1572664..1576101)
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AA seq
1145 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPIKEIAREYFPSNYHSHGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEDRTELKEALSSLEIPDGMGLIVRTAGVGKSAEAL
QQDLSYRLRHWDAIKKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNAKVVEMA
RSHIAAIGRGDFASKIRHYTGAVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALT
AIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRMREAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCLGTGTIRDNESLS
LSVLRLIEEEALKENTHEVHAIVPVQIASYLLNEKRKAVTDIELRQSNVKVVIVPNDQMQ
TPHFSVIRVRKGEEITSLSYNLAQFHESQLNEAEDDVVTERKAPEQPAISAFGLQEEPVA
ETAKNKKAPQPQAKPAKTEEAQSTGFFASIAKFFSNLFGSEPEPAVTQEKPQENKKENND
NRRDRRNNNNRRNNNNRRDRDNDRNRDNANNEDNRKNRNQKPQTTPTTEVSSEQEIAERE
ARRQQRREQRAEQRRRQEEKRQQQQEAAKAQAALSENDTVAKNSADEKKEEPRRPAMQRR
NRRQLTQSVRVTDNDNTLAVVPVATEKAVSEPPVATTQTKVAPTEKPAPKAVAVVKVEAN
EAQVVKALPDATKSQDDNKNEDNNGQDNVMPRRSRRSPRHLRVSGQRRRRYRDERTLTVS
PMPLAMAVASPELASGKVFIRYPVTPVSDAPFIENNVENNNDVSVGNHIITHKDPQMVAI
APAASEAIVADIAQTETTESTYSVTVSTESTTDAVAEIVAVEPQAEPIETNVINDAINDV
NTEEHVTRKENISAVLNTTEAYMHETSQQTETNIVPEEVAQDTVAPVKNETSISEPQPVE
TVIATEETVEQHKEVAVESVATPVVETVVEGQPVESATPVVEVEAVTKRKPAEVVIRQEP
VVAARQLHASSPMTKAPAADEAPVAIQIKAWEARPAFDKKGRSGAGGHCSTNHASSEMTK
AESKN
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcgactcagcaggaagagttgcgtgttgcccttgtcgat
gggcaacgtttgtacgatctggatatcgaaagccccggtcatgaacagaaaaaagcgaat
atctataaaggtaaaatcactcgaattgaacccagcttagaagccgcttttgttgattat
ggtgcggaacgccacggtttccttcctatcaaagaaatagcccgcgaatactttcctagt
aattatcactcccatggtcgtcctaacatcaaagatgtcttaaaagaaggccaggaagtt
atcgttcaagttgataaagaagagcgtggtaataaaggtgcagcgttaaccacttttatc
agccttgcaggaagttatttggtattaatgccaaataatcctcgtgcaggtggtatttct
cgccgtattgaaggtgaagatcgtactgaacttaaagaagctttatctagccttgaaatc
ccagatggcatgggtctgattgtacgtacagctggtgttggtaaatcagctgaagcacta
caacaagacttaagctatcgtctaagacactgggatgctattaagaaagcggctgagaat
cgccctgcaccatttttaatccaccaggaaagtaatgtaattgttcgcgcattccgcgac
tacttacgtcctgatattggtgaaatcttaattgataacgcaaaagtcgttgaaatggcg
cgtagtcatattgcagcgattggccgtggtgattttgctagcaaaattcgccattacact
ggcgccgttcctctatttagtcattaccaaattgaatcacagattgaatctgcgtttcag
cgtgaagttcgccttccttctggtggcgctttagttattgatacaactgaagcattaaca
gcgattgatatcaactcctcacgctcaacccgtggtggtgatatcgaagaaactgcattt
aatactaacttagaagcagctgacgaaattgcacgtcaattacgtttacgcgacttgggt
ggtttaattgttatcgactttattgatatgacgccagtgcgccatcagcgtgaagttgaa
aacagaatgcgtgaagctgttcgtcaagatcgtgctcgcattcaaattggacgcatctct
cgctttggtttattagagatgtctcgccaacgtttaagcccttcattaggtgaatctagc
catcacgtttgcccacgttgcttaggtactggtactattcgtgataatgaatcactgtca
ctttctgtgttacgtcttattgaagaagaagcacttaaagaaaatacccatgaagtgcat
gcaattgtacctgttcaaatcgcctcttatttactgaacgaaaaacgtaaagctgttacc
gacatcgagttacgtcaatctaatgtcaaagtggttattgttcctaatgaccaaatgcaa
acccctcatttctctgttattcgtgtacgtaaaggcgaagaaattacttcccttagctac
aacttagcgcaattccatgaaagtcagttaaatgaagctgaagacgatgttgttacagag
cgtaaagcacctgaacaacctgctatttcagcctttggattacaagaagaacctgttgct
gaaacagcaaaaaataaaaaggcgcctcaaccgcaagctaaacctgctaaaacagaagaa
gctcaaagtactggtttctttgcttctattgcaaaattcttctcaaacttatttggtagc
gaaccagagcctgcggtaacacaagaaaaaccacaggaaaacaagaaagagaataacgac
aaccgtcgtgatcgtcgtaataacaataatcgacgtaacaataataatcgccgtgaccgt
gataacgatcgtaatcgtgataacgcgaataacgaggacaatcgcaagaatcgcaatcag
aaaccacaaacaactccaacaactgaagttagtagtgaacaagagattgcagaacgcgaa
gctcgtcgccagcagcgtcgtgaacaacgtgctgaacagcgtcgtcgtcaagaagagaaa
cgtcaacagcaacaagaagcagctaaagctcaggcagctctttctgaaaatgatacggtt
gcaaaaaatagtgctgatgagaagaaagaagaacctcgtcgccctgctatgcaacgccgt
aatcgtcgtcaattaacacaatctgtacgtgtgactgacaatgataatacattagccgtt
gtacctgttgcgaccgaaaaagcggtttctgaaccaccagttgcaactacacaaactaaa
gttgccccaactgaaaaaccagcacctaaagcagttgctgttgtgaaagttgaagcaaat
gaagcacaagttgtaaaagcactacctgacgcaactaaatcacaagatgacaataaaaac
gaagataataacgggcaagataatgttatgccacgtcgttctcgccgttcacctcgtcat
ctacgtgtaagtggtcaacgtcgtcgtcgctatcgtgatgagcgcaccttaacagtatca
ccaatgcctctggcaatggcagttgcttctcctgagctggcttcaggtaaagtcttcatt
cgctaccccgtcactcctgtaagtgatgcaccatttattgagaataatgttgaaaacaac
aatgacgtttctgttggaaaccacattattactcataaagatccacaaatggtagctatc
gcaccagcggcttcagaagccattgttgctgatatcgcacagacagaaaccacggagtca
acttactctgttacagttagcactgaatcaaccactgatgctgttgctgaaattgttgca
gtagaaccacaagctgagcctattgaaactaacgtgatcaatgatgcaatcaatgacgtg
aatacagaagagcatgttactcgtaaagagaatatttcagcagtattgaataccactgaa
gcttacatgcatgaaacttcacaacaaaccgaaacaaatatcgtgccggaagaagttgca
caagatacggttgcaccagtaaaaaatgaaacatcaatatctgaacctcaacctgttgaa
acagtgatagcaactgaagaaactgttgaacaacacaaagaagttgctgttgaaagtgtt
gctacccctgttgttgaaactgtcgttgaaggtcagccagtagaaagcgcaacaccggtt
gtggaagttgaagcagtaacaaagcgcaaaccagctgaagttgttattcgtcaagagcct
gttgtagctgcacgccaattacatgcaagctcaccaatgacaaaagcaccagccgctgat
gaagcgcctgtggcaattcaaatcaaagcatgggaagctcgccctgcttttgataaaaaa
ggccgctcaggtgcaggtggacattgttctactaaccacgcttcttcagaaatgacgaaa
gctgaaagcaaaaactga
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