Proteus terrae subsp. cibarius: F9282_15720
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Entry
F9282_15720 CDS
T06330
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pcib
Proteus terrae subsp. cibarius
Pathway
pcib02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcib00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F9282_15720 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcib03021
]
F9282_15720 (rpoD)
Transcription machinery [BR:
pcib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F9282_15720 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Cwf_Cwc_15
Sas-6-like_oligomerization
BUD22
CDC45
Vfa1
Motif
Other DBs
NCBI-ProteinID:
QGW05222
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Position
3337085..3338941
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AA seq
618 aa
AA seq
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MEQNPQSQLKLLVTKGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENSNDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITAFIDPNAEEMAESED
VNLDKDDDDVDNSDEDEDEDEDEDSDNDSDSDDDNSIDPELARQKFTELREQYEKTRQTI
KAKGRNHKDTELEILLLSEIFKQFRLVPKQFDYLVNNMREMMDRVRAQERHIMRLCVDQV
KMPKKNFITLFTGNETNDTWFTAARAMNKPWSEKLAGIEEEVQRSLQKLQQIEVETGLTI
EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG
REPSPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA
TSESLRSATHEVLAGLTLREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSEVLRSFLDE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgttactaaaggtaaggagcaaggc
tacctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattcagatcaa
atcgaagacatcatccagatgattaacgacatgggcattcaggttatggaagaagcacct
gacgccgatgatctgatgctggcagaaaattcaaatgatactgatgatgatgctgcagaa
gccgcagctcaggtactttctagtgtagaatctgagattggccgtacaaccgaccctgtc
cgtatgtatatgcgagaaatgggaacagttgaactgctcacccgggaaggtgaaattgat
atcgcaaaacgcattgaagatggtattaaccaagttcaatgttccgttgcagaatatcct
gaagcaattacttatcttcttgaacagtatgatcgcgttgaagctggcgaagcacgtctt
tcagacttaattactgcgtttattgaccctaatgccgaagaaatggcagaaagtgaagat
gtcaatttagacaaagatgatgatgacgttgacaatagtgatgaagacgaagatgaagac
gaagatgaagatagcgacaatgacagcgatagcgatgatgataacagcatcgatcctgaa
ttagcgcgtcagaaatttactgagcttcgtgagcaatacgaaaaaactcgccaaactatc
aaggcgaaaggtcgtaaccacaaagatacagagcttgaaatcttattgttatctgaaatt
ttcaaacagttccgcttagtaccaaaacagtttgattatctggttaacaatatgcgtgaa
atgatggacagagttcgtgctcaagaacgtcacatcatgcgtctttgtgttgatcaagtt
aagatgccaaagaaaaacttcattactttgtttacaggtaacgaaaccaatgacacatgg
ttcactgctgctcgtgcaatgaataagccttggtctgaaaaactggcaggtattgaagaa
gaagtacaacgcagtttacaaaagctgcaacaaattgaagttgaaactggactgacaatc
gaacaggttaaagatattaaccgtcgtatgtctatcggtgaagccaaagcacgtcgtgcg
aaaaaagagatggtcgaagcgaacttacgtctcgttatctctatcgcgaaaaaatatacc
aaccgtggcttgcagttccttgacctaattcaggaagggaatattggtctgatgaaagcg
gttgataaatttgaataccgtcgtggttataagttctcaacttatgcaacatggtggatc
cgtcaggcaattactcgttcaatcgctgatcaggcgcgtacaatccgtatccctgttcac
atgatcgaaacgattaataaactgaaccgtatctctcgccaaatgttgcaagagatggga
cgtgaaccttcaccagaagagcttgcagagcgcatgctgatgcctgaagacaagatccgt
aaggtactgaaaatcgctaaagaaccaatctccatggaaaccccaatcggtgacgatgaa
gattcacatttaggcgattttatcgaggatacgactctcgaattaccactggattctgca
acatcagaaagcttacgttcagcaactcacgaagtgttagctggcttaacattacgtgaa
gcgaaagtcctgcgtatgcgtttcggtatcgatatgaataccgaccataccttggaagaa
gtgggtaaacagtttgatgttacccgtgaacgtattcgtcagattgaagcgaaggcactg
cgtaaattacgccatccaagccgttctgaggtactacgtagcttccttgacgagtaa
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