Pseudomonas cimarronensis: ACOCLD_00300
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Entry
ACOCLD_00300 CDS
T11824
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pcim Pseudomonas cimarronensis
Pathway
pcim02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcim00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACOCLD_00300 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcim03021
]
ACOCLD_00300 (rpoD)
Transcription machinery [BR:
pcim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACOCLD_00300 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMEM120A-B
ADIP
ING
Major_capside
CEP131_CC
COG6_N
Motif
Other DBs
NCBI-ProteinID:
XQW31378
LinkDB
All DBs
Position
59886..61733
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AA seq
615 aa
AA seq
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MSGKAQQQSRLKELISRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAVAHFPGTVDSILAEYNRVTTEGGRLVEVLSGYIDPDDGSVPAEAA
APVPASDGDAADDKDDDEEDGDSDDEEEEGDGGPDPEEALRRFTAIGEALELAKKALKKH
GRNSKQGNAALKDMAELFMPIKLVPKQYDALVVRVRSSLERLRAQERAIMQLCVRDARMP
RADFLRLFPGNEVDQTWAEQLAKGKAKYAEAIGNLQADIQRCQQKLSALEAECELSLAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtttgaaagaattgatcagccgcggtcgtgag
cagggttacctgacttacgcggaggtcaatgaccacttgccggaggatatttccgatccg
gaacaggtggaagatatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggacgccctgttgttggcggaagccgacaccgacgaagcagccgctgaa
gaagccgctgccgcactcgcggccgttgaaaccgatatcggccgcaccaccgaccccgtg
cgcatgtacatgcgtgaaatgggcaccgtggaactgctgacccgtgaaggcgaaattgaa
atcgccaaacgcatcgaggaaggcatccgcgaagtcatgggtgcagtggctcacttccca
ggcactgtcgacagcattctcgccgagtacaaccgcgtcaccaccgaaggtggtcgtctg
gttgaagtccttagcggctatatcgacccggatgacggcagcgtacccgccgaagccgca
gctcctgttccggccagcgacggtgatgccgccgacgacaaggacgatgacgaggaagac
ggcgacagcgacgacgaggaagaagaaggcgacggcggtccggatccagaagaggccctg
cgccgcttcaccgcgattggcgaagcccttgaactcgccaagaaggccctgaaaaagcac
ggccgcaacagcaagcaaggcaatgccgcgctgaaagacatggccgagctgttcatgccg
atcaagctcgtacctaaacagtacgatgcactggtcgtgcgtgtgcgcagctccctggag
cgcctgcgcgctcaggaacgcgccatcatgcaactctgcgtacgtgatgcccgcatgccg
cgcgccgacttcctgcgcttgttccctggcaatgaagttgaccagacctgggccgagcaa
ctggccaagggcaaggccaagtacgccgaagccattggtaacctgcaagccgacatccag
cgttgccagcaaaagctgtctgccctggaagccgagtgcgaactgagcctggctgaaatc
aaggacatcaaccgtcgcatgtcgatcggcgaggccaaggcccgtcgcgcgaagaaagag
atggttgaagcgaacctgcgtctggtgatctcgattgccaagaagtacaccaaccgtggc
ctgcagttcctcgacttgattcaggaaggcaacatcggcttgatgaaggcggtggacaag
ttcgaataccgtcgcggctacaagttctcgacctatgccacctggtggattcgtcaggcg
atcactcgctcgatcgccgaccaggcgcgcaccatccgtattccggtgcacatgatcgag
acgatcaacaagctcaaccgtatttcccggcagatgctgcaggaaatgggtcgcgaaccg
accccggaagagctgggcgagcgcatggaaatgcctgaggacaagatccgcaaggtactg
aagatcgccaaagagccgatctccatggaaaccccgatcggcgacgacgaagactcgcat
ctgggcgacttcatcgaggacagcaccatgcaatcgccgatcgacgtggcgaccgtggaa
agcctcaaggaagccacccgcgaagtactctccggcctcactgcacgtgaagccaaggta
ctgcgcatgcgcttcggcatcgacatgaataccgatcacacccttgaggaagttggtaag
cagttcgatgtaacccgcgagcggattcgtcagatcgaagccaaggcgctgcgcaagctg
cgccacccgacgagaagcgagcacctgcgctccttcctcgacgagtaa
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