Pseudomonas cimarronensis: ACOCLD_01610
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Entry
ACOCLD_01610 CDS
T11824
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pcim Pseudomonas cimarronensis
Pathway
pcim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACOCLD_01610 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcim03021
]
ACOCLD_01610 (rho)
03019 Messenger RNA biogenesis [BR:
pcim03019
]
ACOCLD_01610 (rho)
Transcription machinery [BR:
pcim03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACOCLD_01610 (rho)
Messenger RNA biogenesis [BR:
pcim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACOCLD_01610 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
AAA_22
S1CSD-TOTE-2
GTT3_N
Motif
Other DBs
NCBI-ProteinID:
XQW31624
LinkDB
All DBs
Position
complement(346503..347762)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQLGLENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNKRLVMEAGNGSTEDITGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRAGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLTDKLKATKTNDEFFQSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgaccgaactcaagcaaaagccgatcaccgaactgctggaactcgccgaacag
ctgggcctggaaaacatggcccgttcgcgcaagcaggacgtgattttctcgctgttgaaa
aaacacgctaaaagcggtgaggaaatctccggtgatggcgtgctggagattctccaggac
ggtttcggctttctccgctctgcggatgcctcgtacctcgctggccccgatgacatctac
gtctcgccgagccagatccgccgcttcaacctgcgtaccggcgacaccatcgttggcaaa
atccgcccaccgaaagaaggcgagcgttacttcgccctgctcaaggtcgatacgatcaac
tttgatcgtccggaaaacgccaagaacaagattctgtttgaaaacctgacgccgctgttc
cccaacaagcgtctggtgatggaagccggtaacggctccaccgaggacatcaccggccgg
gtgatcgacctctgcgcaccgattggcaagggccagcgcggcctgattgtcgccccgccg
aaagccggtaagaccatcatgctgcagaacatcgcggcgaacattgcgcgcaacaacccc
gagtgccacctgatcgttctgctgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggtcgcctcgaccttcgacgagccgccgacccgccacgtg
caggttgctgaaatggtcatcgagaaggccaagcgcctggttgagcacaagaaggacgtg
gtcatcctgctcgactccatcacccgtctggcgcgcgcctacaacaccgtgatcccaagc
tccggcaaggtgctcaccggtggtgttgatgctcatgctctggagaagccgaagcgtttc
ttcggcgctgcgcggaacatcgaagaaggcggctcgctgaccatcatcgccaccgcgctg
gtggaaaccggctcgaagatggatgaggtgatttacgaagagttcaaaggcaccggcaac
atggagctgccgctggaccgtcgtatcgccgagaagcgtgtgttccctgcgatcaacatc
aaccgcgccggtactcgtcgcgaagagttgctgaccgccgatgacgaactgcagcgcatg
tggattctgcgcaagctgctgcacccgatggacgagattgctgccatcgagttcctcacc
gacaagctgaaagcgaccaagaccaacgacgagttcttccagtcgatgaagcgcaagtaa
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