Pseudomonas cimarronensis: ACOCLD_08955
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Entry
ACOCLD_08955 CDS
T11824
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pcim Pseudomonas cimarronensis
Brite
KEGG Orthology (KO) [BR:
pcim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcim03021
]
ACOCLD_08955 (rapA)
Transcription machinery [BR:
pcim03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
ACOCLD_08955 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XQW33030
LinkDB
All DBs
Position
complement(1928600..1931443)
Genome browser
AA seq
947 aa
AA seq
DB search
MAQYEPGQRWISDSEAELGLGTVLMQDGRMLTMLYPATGETRQYALRNAPLTRVRFSPGD
EITHFEGWKLTVQEVDDIDGLLVYHGLNAQHESVSLPETQLSNFIQFRLASDRLFAGQID
PLPWFALRYHTLDYTSRQLQSNLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVGL
GKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLDVALFDEERFIESDAS
NPFEDCQLALVALEWLCEDDKAQDALFAAGWDLMVVDEAHHLVWHPEHSSPEYALVEQLA
QVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESEHYKPIAEAVQELLDQG
RLSDAAHKTIHDFLGAGGEELLAAVNAGDSEASARLVRELLDRHGTGRLLFRNTRAAVQG
FPDREVHPYPLASPDEYMELPIGEHADLYPEVSYQAQPDVDEEQRWWKFDPRVEWLIDTL
KMLKKFKVLVICAHAETAMDLEDALRVRKGIPATVFHEGMSILERDRAAAYFADEEFGAQ
VLICSEIGSEGRNFQFAHHLVLFDLPAHPDLLEQRIGRLDRIGQKHRIQLHVPYLENSPQ
ERLFQWYHQALNAFLATCPTGNALQHQFGSRLLPLLESGDDGEWQALVDEAKAERIRLEG
ELHAGRDRLLELNSGGAGEGEALVAAILEQDDQFALPIYMEQLFDAFGIDSEDHSENALI
LRPSEKMLDASFPLGDDEGVTITYDRDLALAREDMQFLTWEHPMVQGGMDLVRSGSMGNT
GVALIKNKALKPGTVLLELLYVSEVVAPRTLQLGRYLPPIALRCLLDANGNDLASKVSFE
KLNEQLEPVPRASANKFVQAQRDSLNPLINAGESKVAPRHSERVDEAKRRLAAETDEELA
RLIALQAVNPSVRDSELNALRQLREQGLAMLDKAALRLEAIRVLVAG
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagtatgaaccggggcaacgctggatcagtgacagcgaggcggagctgggtttg
gggaccgttctgatgcaggacggccgcatgctcaccatgctctacccggccaccggcgaa
acccgtcagtacgccctgcgcaatgcaccgctgacccgcgtacgcttctcgccgggcgat
gagatcacccacttcgaaggctggaagctgaccgtacaggaagtcgacgacatcgacggc
ctgctggtctaccacggcctcaatgcccagcatgaaagcgtcagcctgccggaaacccag
ctgtcgaactttatccagttccgcctggccagtgaccgcctgtttgccgggcagatcgac
ccgctgccctggttcgccctgcgctaccacaccctcgattacaccagccgccagctgcaa
tccaacctttggggcctgggcggcgtgcgtgcgcaaccgattgcccaccagctgcacatc
gcccgcgaagtcgccgaccgcatcgccccgcgcgtcttgttggccgacgaagtgggcctg
ggtaaaaccatcgaagccggtctggtgattcatcgccagctgctctccggacgcgccagc
cgcgtgctgatcctggtgccggaaaacctccagcaccagtggctggtggagatgcgccgg
cgcttcaacctggatgtcgcgctgttcgatgaagaacgctttatcgaaagtgacgccagc
aaccccttcgaagactgccaactggcgctggtcgccctggaatggctgtgcgaagacgac
aaggcccaggacgcgctgtttgccgctggctgggacctgatggtggtcgacgaagcgcac
cacctggtctggcacccggaacattcgagcccggaatatgcgctggttgaacagctggcc
caggtcatccccggcgtactgctgctaaccgccaccccggaacaactcggccaggacagc
cacttcgcccgcctgcgtctgctcgacccgaaccgcttccatgacctggccgcgttccgt
gccgagagcgagcactacaaaccgattgccgaagccgtgcaggaactgctcgaccagggg
cgcctgtcggatgccgcgcacaagaccattcacgacttcctcggcgccggcggcgaagag
ctgctggccgcggtgaatgccggtgatagcgaagcctcggcgcgcctggtgcgcgagctg
ctggatcgccatggcactggtcgcctgctgttccgtaacacccgcgccgccgtgcagggc
tttccggaccgtgaagtgcacccctacccgttggccagccctgatgaatacatggagctg
ccgattggcgagcatgccgacctctacccggaggtcagctaccaggcgcagccggatgtc
gatgaagaacagcgctggtggaaattcgacccgcgcgtcgagtggctgatcgacaccctg
aagatgctcaagaagttcaaggtgctggtgatttgcgcccacgccgaaaccgccatggac
ctggaagacgccctgcgtgtgcgcaaaggcatcccggctacggtgttccatgaaggcatg
agcattctggagcgcgaccgcgccgccgcctacttcgccgatgaagaattcggtgctcag
gtgctgatctgctcggaaattggctcggaaggtcgtaacttccagttcgcccaccatctg
gtgctgtttgacctgccagctcacccggatctgcttgagcagcgcatcggccgcctcgac
cgtatcggtcagaagcaccgtatccagctgcacgtgccgtacctggaaaacagcccgcag
gaacgcctgttccagtggtatcaccaggcgctgaacgccttcctcgccacctgcccaacc
ggcaacgccctgcaacatcagttcggcagccgcctgctaccgctactggaaagcggcgac
gacggtgagtggcaagccctggttgacgaagccaaagccgagcgcattcgcctagaaggt
gagttgcacgccggtcgcgaccgcctgctagagctcaactccggcggtgccggtgagggt
gaagcgctggtagcggcgattctcgagcaggacgaccagttcgccctgccgatctatatg
gagcaattgttcgacgccttcggcatcgacagcgaagaccactccgaaaatgccctgatc
ctgcgccccagcgagaaaatgctggatgccagcttccccctcggcgacgacgaaggtgtg
accatcacctatgaccgcgacctggctctggcccgcgaggacatgcagttcctcacctgg
gaacaccccatggtgcaaggcggcatggacctggtgcgttccggctcgatgggcaacacc
ggcgtggcgctgatcaagaacaaggcgctgaaacccggcaccgtgctgctggaactgctg
tatgtcagcgaagtggtggcgccacgcaccctgcagctgggccgctacctgccgccgatc
gccctgcgctgcctgctcgatgccaacggcaatgacctggccagcaaggtgtccttcgag
aagctcaacgaacagctggagcctgtgccacgcgccagcgccaacaagtttgtccaggcc
cagcgcgacagcctcaacccgctgatcaatgccggcgaaagcaaggtggcgccacgccat
agcgaacgcgtcgacgaagccaagcgccgtctggccgccgaaaccgacgaggaactggcg
cgcctgatcgccctgcaagcggtcaaccccagtgtgcgcgacagcgaactcaacgccctg
cgtcagctgcgcgaacaaggcctggccatgctcgataaggcggcgttgcgtttagaagcc
attcgcgtgctggtcgccggctaa
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