Prosopis cineraria: 129286103
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Entry
129286103 CDS
T09047
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pcin
Prosopis cineraria
Pathway
pcin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129286103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcin03021
]
129286103
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129286103
Transcription machinery [BR:
pcin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129286103
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
129286103
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
129286103
NCBI-ProteinID:
XP_054778102
LinkDB
All DBs
Position
Unknown
AA seq
916 aa
AA seq
DB search
MDPPNFLFSRENPRPLSFSTAPIVSSKPIIPNEIAQKPPPSILLGRFKTLLKEREDEFRA
SFGDDVPVPPPSTEEIVQIYQLLLSDLTCNLKPIITDLTIIAELQIEHARGIADAICTRI
LEVPADQKLPSLYLLDSIVKNVGREYIGHFSSCLPEIFCEAYRQVHPKLHNAMRHLFGTW
STVFLPSVIRKIEAQLQFSQAINDPSSTTDPLRVSESRQATHGIHINPKYLQQLEHSTND
SVGGEKLESTVNLGLANFGRGVSKIHQPLSSRLGRSPPSGIGLDRPPSATIDEIAVHNSA
GRLVERDTLSHPAFDYGVGKAGSRTEELSGWKQQYSDDGQNQFQVNGHQRQSLKALIDAY
GSDKNNETFNNKPLVVERQDTNGINRVVSTSWQNTEEEEFDWEDMSPTLVDHSRNNDFFP
SSIGFSRERPVISAATSNRILGIVGLVGHSFHQWMIPLFYGRGSPVHVSGYQNQTNRSLN
SHPPLDAWNIRGRASNLQTSPVSNIPNSDINLYGTGSALSRMGSTLESNVEIHPTVLPAT
LGMRPPVNVHAIRPPTLNPTFPLDKHIRSYRFIKVASLAKPASWQISFNQQNCGQAQIFP
SQDMQEKLLRSQAPTPLQFSRGSFLQGHIDAISTAMPNSLPAVQFPIPVQNIANNSSHLQ
RGNLMSLPPMSHPAMSRTIPHSNAGPNVSARRPGGAFSGLINSLMSQGLVSLTNQPPKQD
SVGTEFNPDVLKICHESAICALYGDLPRQCTTCGLRFKCQEEHRSHMDWHVTKNRMSKNR
KQKPSRKWFVSESMWLSGAEALGTESVPGFLPTEDVEEKKCDEELSVPADEDQNTCALCG
EPFDEFYSDETEEWMYRGAVYVNAPNGTVAGMDRSQLGPIVHAKCRSESSVVPAEDIGLD
ERGTDEEGSRRKRMRS
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggaccccccaaatttcttattttcccgagaaaaccctagacccctctcgttctctact
gctccaattgtctcctcaaaacccattatccccaatgagatcgcccagaagcctccccct
tcgattctattgggccgattcaagactttgctaaaagaacgcgaggatgaattcagggct
tcctttggtgacgacgtgccggtgccaccccctagcactgaagaaattgtgcaaatttac
cagttgttattgtcggacctcacttgcaacttgaagcctatcattacggatctaaccatt
attgctgagcttcagatagagcatgccaggggcatcgccgatgcaatttgcactcggatt
ctcgaggtgcctgcagatcaaaagcttccatcgctatatcttttggacagtattgtgaag
aatgttggtcgggaatatattggacacttctcttcatgtctgcctgaaattttctgtgag
gcatacaggcaggttcaccctaagctccataatgctatgcgccatctctttggcacctgg
tcaacggtctttctgccttctgtcatacgcaagattgaagctcaactgcagttttctcaa
gcaattaatgatccgtcatctaccactgatccccttagggtgtctgagtctcgtcaagca
actcatggcatacatatcaatccgaagtacttgcagcagttggaacactctactaatgat
agtgttggaggtgaaaaattggaatcaacagtaaatttgggtcttgcaaattttggccgt
ggagttagtaagatacatcaacctttatctagcaggcttggaagatctccaccatcagga
atcggacttgataggcctccatcagcaactatagatgaaattgcagttcacaattctgct
ggcaggctagttgagagagatactctttctcatcctgcatttgattatggagttggtaaa
gcaggaagtagaactgaagagttgagtgggtggaaacaacaatattctgatgatggtcag
aaccagtttcaagttaatgggcatcagcgtcaaagtcttaaagctttaatagatgcatat
ggcagtgataaaaacaacgaaaccttcaataataagcctttggtggttgagcgtcaggac
acaaatggtataaacagggttgtgtcaacatcatggcaaaacactgaagaggaggaattt
gactgggaagatatgagtccaacattagtggatcatagtaggaataatgatttctttcca
tcaagtattggtttctccagggaaagacctgttattagtgcagctacttcaaacaggata
ctaggcatagttggtctagtcggtcacagcttccatcaatggatgattcctctgttttat
ggacgtggatcaccagttcatgtatctggataccaaaatcagacaaaccggagtttaaac
tctcatccacctcttgatgcttggaatattagaggtcgagcaagcaatcttcagacatcc
cctgtcagtaacattccaaatagtgatataaatctatacgggactggatctgctttgtcc
agaatgggttccacacttgagtctaatgtggagattcatccaacagttttaccagccact
cttggaatgaggcctccagttaatgttcatgcaattcgcccccccactttaaacccaaca
tttccgttggataaacatatcagaagttacaggtttatcaaagttgcatcacttgccaag
ccagctagctggcagatttcatttaaccagcaaaactgtggacaagcacaaatctttcct
tctcaggacatgcaagaaaagttacttagatcacaagctccaacacctttgcaatttagt
cgtggaagcttcttgcaaggacatattgatgctataagtacagccatgccaaattcgctt
cctgctgtacaattccctattccagtccaaaatattgcaaataactcttctcacttacaa
aggggaaacttgatgtctttacctccaatgtcccatcctgctatgtcacgaacaataccg
cattcaaatgctggtcctaatgtgtcagcccgacggccagggggtgcattttctggttta
attaattcccttatgtcccaaggtttggtatcattgacaaatcaacctcccaaacaggat
tctgttggaaccgagtttaatcctgatgttctaaagatttgtcatgagtctgcaatctgt
gccttgtatggtgatcttcctagacaatgcactacttgtggccttcgattcaaatgccaa
gaggagcaccgtagtcatatggattggcatgttactaagaaccggatgtctaaaaaccgt
aagcagaagccttctcgcaagtggtttgtgagtgagagtatgtggcttagtggcgcagag
gcattgggaacagaatcagtccctggttttttgccaactgaggatgtagaagaaaaaaaa
tgcgatgaagagttatctgtgccagctgatgaggatcagaatacatgtgcattatgtggt
gagcctttcgatgagttttacagtgatgaaactgaggaatggatgtacagaggagctgta
tatgtcaatgcacccaatggaacagtagctggcatggataggtcgcagttaggccccatt
gttcatgcgaagtgcagatctgagtctagtgtggtccccgctgaagatattggactggat
gaaaggggcaccgatgaggagggtagccgacgaaaacgaatgcgaagttaa
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