Prosopis cineraria: 129287651
Help
Entry
129287651 CDS
T09047
Name
(RefSeq) endoribonuclease Dicer homolog 3b-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pcin
Prosopis cineraria
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pcin03036
]
129287651
Chromosome and associated proteins [BR:
pcin03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
129287651
microRNA pathway
RISC loading complex
129287651
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
Helicase_C
PAZ
ResIII
dsrm
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
129287651
NCBI-ProteinID:
XP_054779849
LinkDB
All DBs
Position
Unknown
AA seq
1647 aa
AA seq
DB search
MEVLDTGAGKTMIAVMLIRQIAHSTKSTHQKKLIVFLAPTVHLVNQQFGVIKSYTNLAVE
EYHGAKGIDDWNLNGWEKGIEVQDVMVMTPQILLDGLRKEFFKMETVSLLVIDECYRASG
NHPCVKIMKEFYHTSSDKPKIFGMTASPVIGKVISSTTDCKGQISTLEIILNSQIYTIKD
RTELEICVPSASETCRFYDQAQFPFQGLKLMMETLWSGFDASLLRLQRSRENQYKDVGDR
LERMRKRFSKDYSKILYCLEDLGLVCAYEAAKFCQENSSDPQEDSKLYNESHLKHTQFLN
ELLQLLGVFSLTGINNFGDFSDDLVKAVDLGYISPKLHELINIFKSFGESNEVLCLVFVE
RIITAKVLDRLVKKIKFLSHFTVSHITGSNSSCDSVVPKMQNEILQLFSCGKVNLLFATD
FVEEGIQVANCSCVIRFDLPKTVRSYVQSRGRARQNNSQFVIMIERENVKQRNQLFDIIR
SEYSMADVTMKRDDSSALVPYRTEEIHTYCVNTTGACVTADSSVSLIHRYCEKLPGDKYF
VPKPIFQLSYSEGNYQCKLSLPPNAPFQTLIGPASSNSQLSKQLVCLEACKKLHQIGALN
DHLLPFSEEPLDSNTCFNWKKSPAGEGTTKLKELHGTACIRALSGTWIANPNGANFHAYK
FDFTCDIIEEIYSGFVLLMESKLDDDVGNCEADLYLISKTVKSRVSAWGNVYLDAEQMFK
AKGFQELFFNGLFGRLFVGSEESGVKRVFLLQHQTSKLWSPSKMYLLLPLETLNSEGEAL
RINWRGVNSCIEVIQYFQSRALSYVLSSELCHKQNLSNRNGSSDMEQKSSMTAHLANCVV
DIDGLKDMVVLAIHTGRFYSVVEVVTNTSAECPFSYNGSDVSVSSEYSTYIEYYRKRYGI
MLMYPGQPLLRLKQSHNPHNLLVNFRSEGVSSVSEKEQVHVYMPPEVLVKTDVPVQVLKS
FYLLPSLMHRLESLMLASQLRKEINFNSGSFQIPSSLILEALTTLKCCEIFSMERLELLG
DSVLKYAVSCHLYLRYPEKHEGQLSDWRSSLISNSALHKLGTNCNLQGYIRDSAFEPRRW
AAPGQISIHGVPCRCGVDTSEVPLDEKFQTKNPTCKVGKLCDRGHRWICSKTISDCVEAL
IGAYYVGNGLVAALHTMKWLGIGLELDPSLVEEAINKASLRCYVPKANEITALESKLGYE
FSCKGFLREAITHASEQELGVGYCYQRPEFLGDSVLGLLLTWHLHKTYQDIDPGRLTDLR
SNAISNENFALVCIRRNLQPHLLHCSGFLQSQVTEFVRSLTEPLNNSSLHEKIKAPKALG
DMVESIAGAILIDTNLDLEKVWRIFEPLLSPIVTPDSLKLPSLRKLNEMCDSLGYFIKER
CIKVGEMVHSELRLQMEDVLLIGRGCERNKKAAKAAAASCLLEELEKKKDVSNRNGISKW
TKKDSDSDDAFPTSSLNMKTCSQVTNEESCRKEKQKVTESQCPERSAKASFPINGCPGKT
CSISPATLVIGPINMSKGGPRTSIFGICKTLQWPMPTFRTKETKSRTPIEFREGSDKRYG
FNSYVSKIMLQIPSSGIMECTGNPKADKKTSFDSAALTMLYELQQRGRISIISVPTEALH
HNKLLLDDKANKSMYPMLIDQTSKHVK
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgctggatactggtgctggaaagactatgatagctgtgatgcttattaggcag
attgctcattccactaagtccactcaccaaaagaagttgattgttttcttggcacccact
gtccatcttgttaatcagcaatttggggtcataaaaagttacacgaatttggcggtggaa
gaataccatggagccaagggaatagacgattggaatttgaatggctgggaaaagggaatt
gaagtgcaggatgtcatggtcatgacaccacaaattctcttggatggcttaagaaaagaa
ttctttaaaatggaaacagtctctttgttggttattgatgaatgctatcgtgcaagtggg
aaccatccttgcgttaaaataatgaaggaattttatcacacatctagtgacaagccaaag
atttttggaatgacagcatcaccagttattggaaaggttatctcatccactacggattgc
aagggtcagatctctactcttgaaatcatcttgaattctcagatttatactattaaagac
agaacggaattggaaatatgtgtgccctctgcctctgaaacttgtagattctatgatcag
gcacaatttccatttcagggtctaaagctaatgatggaaactttatggtctgggtttgat
gcttcattgctgagactgcaacgatcaagggaaaaccaatacaaagatgtgggtgataga
cttgagagaatgagaaagcgattttctaaagactattcaaagatcttgtattgccttgaa
gatcttggccttgtatgcgcttatgaggctgctaaattctgtcaagagaacagctctgat
ccccaagaagacagtaaactttataatgaaagccatttgaagcacacacaatttcttaat
gaactgctgcaactacttggggtattttccctgactggcattaacaattttggggacttt
agtgatgaccttgtaaaagcagtagacttgggatatatttctccaaaattacatgaactt
ataaacattttcaaatcatttggagaaagtaatgaagtattgtgcctcgtatttgttgaa
agaattatcacagcaaaagtcctcgacagacttgtgaagaaaattaagtttttgtcacat
tttactgtgtcacatataactggaagcaatagctcttgtgattcagtggtgccaaagatg
cagaatgaaatcttacagttgttttcctgtggaaaggttaacttactatttgcaactgat
ttcgttgaggagggaattcaagtggcaaattgctcttgtgtgatacgttttgatctgccc
aaaacagttcgtagttatgtccaatcaaggggaagggctcggcaaaataattcccaattt
gtcatcatgattgaaagggaaaatgtgaagcaaagaaatcaactgtttgacattattagg
agtgaatactcaatggcagatgtgacaatgaaaagagatgattcttctgctctggtaccc
tataggactgaggaaatacacacgtattgtgtcaatacaacgggtgcatgtgttactgcg
gattctagtgtcagtctcatccatagatattgtgaaaaactccctggtgataagtacttt
gttccgaaaccaattttccaattgtcatattctgaagggaattatcaatgtaaattatca
ttgcctcctaatgcaccttttcaaacattaattggtcctgcgagtagtaattctcagttg
tcaaagcagcttgtatgcttggaggcatgtaaaaagctgcatcagataggtgctctgaat
gaccatcttctccctttttctgaagagcccttggatagtaatacgtgctttaattggaaa
aagtcaccagccggagaaggaacgaccaaactgaaggaattacatgggactgcttgtatt
cgtgcattatctggaacttggattgcaaatccaaatggagccaattttcatgcctacaaa
tttgatttcacttgtgacattattgaagagatttattctggatttgttcttctgatggaa
tcaaaacttgatgatgatgtgggaaattgtgaggcagatctatacttgatctcaaagaca
gttaagtctcgtgtttctgcatggggaaatgtgtatttggatgcagaacagatgttcaaa
gcaaagggttttcaggaacttttcttcaatggtttgtttgggagactttttgttggatca
gaagaatctggagtgaagagagtattcttacttcagcatcaaacaagcaaattgtggagc
ccgtcaaagatgtatttgcttttgccattagagacattgaacagtgaaggagaagctctg
agaataaactggagaggggtgaactcctgtatagaagtgatacaatattttcagagtaga
gctctgagctatgtattaagttctgagctctgtcacaaacaaaatttatcaaatcgaaat
ggttcatctgatatggagcagaagagctcaatgacagctcatttggctaattgtgtagtt
gatattgatggtctcaaagatatggtagttttggctattcacactgggaggttctattct
gtagttgaggttgtgaccaatacttctgctgagtgtcctttcagctacaatggatccgat
gtgtctgtttcatctgaatatagtacttatattgaatactacagaaaaagatacgggatt
atgctaatgtaccctggacagcctttgttgaggttgaagcaaagtcataatcctcataat
cttcttgtgaacttcaggagtgaaggcgtatcttcagtttcagaaaaagaacaagttcat
gtttatatgccacccgaagttttagtcaaaactgacgttcctgtgcaagttttgaagtca
ttttacttactgccatcactgatgcaccgcttagaatccttgatgttagccagccagctg
agaaaggagatcaattttaactccggcagctttcagataccaagttctctgattcttgaa
gcattgacaacactgaaatgctgtgaaatcttctccatggaacgtttggaattgcttggg
gattcagttctaaagtatgcagtgagctgccacctttaccttagatatcctgagaaacat
gaaggacagctatctgattggcgttcgtctcttatttcaaattcagccttgcataaattg
ggaaccaactgcaatttgcagggatatatacgtgatagtgcatttgaaccacgtcgttgg
gccgctccagggcagatttctatacatggtgttccttgtagatgtggtgtggatacttca
gaagtgcctttggatgagaaattccaaactaagaatccaacttgtaaggttggaaagttg
tgtgacagaggacacaggtggatttgttcaaagactatatctgattgtgttgaggccctt
attggagcttattatgtgggcaatggccttgttgctgcacttcatacaatgaagtggctt
ggtattggccttgaacttgatccctcgttagtagaagaagcaatcaacaaggcatcttta
aggtgctatgtcccaaaagctaatgaaatcacagccttagaatcaaagcttgggtatgaa
ttttcttgcaagggtttcttacgggaggctataactcatgcatcagagcaagaactaggg
gttggctattgttaccagaggcctgaatttctaggcgactcagttttgggtcttctcctt
acgtggcatctccacaagacctaccaagatattgatccaggaagattgactgatttgcgt
tcaaatgcaattagcaatgaaaattttgctctagtttgcataagaaggaaccttcaacca
caccttctgcactgctcagggtttcttcaaagccaagtaacagagtttgtgaggtcattg
actgagcctctcaacaactccagcttacatgaaaagattaaggctccaaaagctcttgga
gacatggtggaaagcattgctggtgctatacttattgataccaatctcgatctggagaaa
gtatggagaatctttgaaccactattgtctccaatagtgactcctgacagcctaaaactc
ccttcactgcgtaaactcaatgaaatgtgtgactctcttgggtactttataaaagaaaga
tgcataaaagtaggagaaatggtgcattctgaacttagattgcagatggaagatgtctta
ttaattggaagaggctgtgaacgaaacaagaaggctgccaaagcagcagctgcaagctgt
ctgttagaagaacttgagaagaagaaagatgtttcaaaccgtaatggcatttccaagtgg
acaaaaaaagattctgattctgatgatgctttccctacctcttcactgaatatgaaaaca
tgtagccaagtgactaatgaggaatcttgtaggaaagaaaagcaaaaggtaactgaaagt
caatgtccagaacgatcagctaaagcttctttcccaatcaatggttgtcctgggaaaacc
tgcagcatcagtcctgctaccctagttattggaccaataaatatgagcaaaggtggaccc
cggacctcaatatttggaatttgcaagacattacagtggccaatgccaacattcagaacc
aaagaaactaaatccagaactccgatcgaatttagagaaggctcagataaaagatacggt
ttcaatagctatgtatctaaaatcatgctacagatcccaagctctggcatcatggagtgt
acaggaaatcccaaggctgacaagaaaacctcatttgactcagcagcactaacaatgctt
tatgaactccaacaacgtgggaggatatctattatttcagtaccaactgaagcattgcat
cacaacaagctccttcttgatgataaggcaaacaagtctatgtatccaatgctaattgac
cagacatctaagcatgtcaagtga
DBGET
integrated database retrieval system
