Prosopis cineraria: 129287652
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Entry
129287652 CDS
T09047
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 21
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129287652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcin03041
]
129287652
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129287652
Spliceosome [BR:
pcin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
129287652
Complex C
U5 SnRNP specific factors
129287652
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
129287652
NCBI-ProteinID:
XP_054779850
LinkDB
All DBs
Position
Unknown
AA seq
717 aa
AA seq
DB search
MKRPVDDIVVPLASSSTVAAPSKPVFLTKAQREQLALQRRQEEITEQRRRQEQLLSRNRP
SDPNPESKPSDSDRRDRDRERDRDRDRDRDRERERDRERERDRARDRDRETERRNRERER
EEEAKTRERARMEKLAEREREKELEAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDT
SRDMNTLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKEGVEEKPEEAV
AQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWV
ESKLSPELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYIT
RLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKI
RQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNL
KPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVI
MMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDREGYRVTTLHGGKSQEQRE
ISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVA
TTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtccggtcgatgacatcgtcgtgcccttggcttcttcctccaccgttgctgcg
ccttcgaagccggtgttcttaacaaaagctcaacgcgaacaattggcccttcaacgacgc
caagaagaaatcacagaacaaagacgccgtcaggaacagctgctttctcggaaccgccca
tccgacccgaaccccgagtctaaaccctccgattccgaccgacgcgaccgcgaccgagaa
cgcgatcgtgaccgcgatcgtgaccgggatagagagcgggagcgcgaccgtgagcgcgag
cgagatagggctcgcgatcgggaccgtgaaacagaacgtaggaaccgcgagagggagcgt
gaagaggaggctaagacccgcgagcgtgctcggatggagaaattggcagagcgggagcgt
gagaaagagcttgaagcgatcaaggagcagtatcttggatcaaagaagcctaagaagcgg
gtcatcaaacccagtgagaagtttcggttttccttcgactgggagaacacggaggatact
tctcgtgacatgaacacactttaccagaaccctcatgaagcgcagcttctctttggtcga
ggctttcgtgctggcatggaccggcgtgagcagaaaaagctcgctgccaagaatgagaag
gagatgcgtgaacagatccggaagaaggagggggtggaggagaagcccgaagaggccgtt
gcacaacggcgaaaggaggctgctgctgacctctatgacacctttgacatgagagttgac
cgtcattggagcgagaagaagcttgaggagatgactgagagggattggcgtatatttagg
gaggatttcaacatttcctacaagggttctaaaattcctcgtccaatgcgtagctgggtt
gagagtaagctgagtcctgagctattgaaggcggttgagaaggctgggtacaagacccct
tctcccattcagatggctgccattcctcttggccttcagcagcgtgatgttattggcgtt
gccgagactggttcagggaagactgctgcttttgtgcttcccatgctgagttacatcaca
aggcttcctcccatgagtgaagagaatgaggctgagggtccctatgctgttgtcatggca
cctactcgtgaacttgcacagcagattgaggatgagacggtgaagtttgctcaatatctc
gggatcaaagtggtttccattgttggtggacagtcaattgaagagcaaggttttaagata
aggcaaggttgcgaaattgtaattgcgactcccggtcgattgattgattgcctggagagg
cgttatgctgtcctaaatcagtgcaattatgttgttctggatgaggctgaccgcatgatt
gatatgggatttgagcctcaagttatgggtgtcctggatgcaatgccttccagcaatctg
aaaccagaaaatgaagatgaagagcttgatgagaagaggatttatagaaccacttatatg
ttcagtgccaccatgcctcctgctgttgagcggcttgccaggaaatatttaaggaatcct
gttgtggtaaccataggcactgcaggaaaggctactgatttgatcagccagcatgtgatt
atgatgaaggaatctgagaaattttacaaactgcaacgtttacttgatgaacttaatgac
aagacagcaattgtatttgttaacactaagaaaaatgctgatatggttgcaaagaatttg
gacagggaaggctaccgtgtaaccactttgcatggtggcaagtcacaggagcagagggag
attagtcttgaaggatttaggaccaaaagatataatgtcttggttgctactgatgttgca
gggcgtgggattgacatacctgatgtggctcatgtcataaattatgacatgcctggaaat
attgagatgtacacacatcgtattggacgtactggtcgtgcagggaagactggtgtggcc
acaacgttcctgactcttcaagacagtgatgttttttatgacctcaaacagatgcttata
cagagtaatagtcctgttcctcctgaattggcgagacacgaggcttcaaaattcaagcca
ggaactattcctgatagaccacctagacgaaacgacactgtatttgcacactga
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