Prosopis cineraria: 129288158
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Entry
129288158 CDS
T09047
Name
(RefSeq) uncharacterized protein LOC129288158 isoform X1
KO
K06100
symplekin
Organism
pcin
Prosopis cineraria
Pathway
pcin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129288158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcin03021
]
129288158
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129288158
Transcription machinery [BR:
pcin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129288158
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
129288158
U7-dependent histone pre-mRNA processing factors
129288158
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
129288158
NCBI-ProteinID:
XP_054780555
LinkDB
All DBs
Position
Unknown
AA seq
1331 aa
AA seq
DB search
MVGKIDATSREKLVSLVNSVKLAMDIPSKLDYLRQLKVELPQEDPVLLTEFLPCLFEFQS
DRFSPVRKFVTEMLGEIGSKNTEFLPDIIPVLIAVLDDDTPAVVRQAISCGIDLFHSTLE
KIAIQGLYSSDLDIALESAWTWMLKFKDKVHSLAFQHGSGGAKLLALKFVGAVILLYTPD
PNGSSEPPPHQGRLVEFNISWIRKGHPVLNFKDLSIDASHSLGLLLDQLRFPTVNSLSNS
VIVVLINSLLAIAKDRPAFYGRILPVLLGLKPSSSVVNGIRVTAVHHALKKAFLTCLKCT
HPSAAPWRERLAGALEEMQSEGMADQVFHQVSEINGSIKKEKDDDLDIKEEKPASLSFDS
LHTNLGRKRLGSQDGGDLAEDEDVPEKRSKTTTIVSEPKKELDESTRVCWDNNASTVPRS
SRREVDNGPVQQLVAMFGALVAQGEEAVAPLEILISSISSDLLAEVVMANMCNLPPNNPS
AEGDDEPLHDISITGSDGKAKYPSSFVDCVMSLSSTFPSITVLLDANQSISNEVKSQGEE
EISATGVDNNAVHSGLNPSSENVMLPSDFPSSDAKIPGMESVNTGVPSDIHDVGNLESGI
PGLDSFGRNVALSETVAGSSLASSDIEEASQEQVMGFGQKSPLNIVTSISTDRSEEISPK
AAVTDVNSVVSSAAPSDRSSRLVLPKMIAPVVDLADEQKDNLQKWAFIRIIDAYKQISIA
GGSKVRFSILAYLGVELPLDLDPWKLLQKHVLVDYTSHEGHELTLRVLYRLFGEAEEEPD
FFSSTTAASVYETFLLTVAEALRDSFPPSDKAFSRLLGEAPYLPNSVLKVLENMCSPGNS
DKVEKESQSGDRVTQGLSAVWSLILLRPPIRDTCLKIALQSAVHQLEEVRMKAIRLVANK
LYPLTSISHQIEDFAKEMLLSVMSGDASETADSEGSVAETPKGPDNEKSLIEPSSVSGNS
KDFCSDNHQSCTPESVLLVSVSEAQRCMSLYFALCTKKHSLFQQIFVIYKSTSKAVKQAV
HRHIPILVRTMGSSPDLLEIISDPPHGSENLLMQVLHTLTDGTVPSRDLIFTIKRLHDSK
FKDAEVLIPVLAYLPKDEVMLVFPHIVNLPLDKFQVALVRMLQKSSNSGPVLTPAEVLIA
IHGIDPEKDGIPLKKVTDACNACFEQRQIFTQEVLAKVLNQLVEQIPLPLLFMRTVLQAI
GAFPTLVDFIMGILSRLVGKQIWKYPKLWVGFLKCAQLTQPQSFSVLLQLPPAQLENALN
RSAALKAPLVAHASQADIQSSLPRSVLVVLGIASDPQVSSQPQTSQTQTSETGNSEKDTL
TEKSKESSTAS
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaaaaatagacgccacttcgcgggaaaagcttgtgagtctcgtgaactcggtt
aagttggccatggacattccatccaagctcgattacttgcggcaactgaaggtagaattg
cctcaagaagaccccgttttgctcaccgagtttcttccgtgtctcttcgagtttcagtcc
gatcgtttcagtccagttcgcaaatttgtcacggagatgcttggtgaaattggatctaaa
aacacagagttcttgcctgatattataccggtgctcattgctgttttggatgatgataca
cccgctgttgttcgtcaagctatatcatgcggaattgatttatttcattccactcttgag
aaaattgcaatacagggtttatactcaagtgatctggacattgcacttgaatctgcatgg
acatggatgttaaagttcaaagacaaagtacactcacttgcttttcaacatggtagtggt
ggtgcaaagttgctggccctgaagtttgttggagcagttattcttctatacacaccagat
ccaaatggttcctcagagccccctcctcatcaaggaaggcttgtggagtttaacatatca
tggattcgcaagggtcatcctgtactcaactttaaagatttgtcaattgatgctagtcat
agtttaggtctcctgcttgatcaactcaggtttccaactgtgaattctctcagtaactcg
gtgattgttgtgctaattaacagccttttagcgattgcaaaagacaggcctgccttctat
ggccgcatcttgccagttttgcttggtttgaaaccgtcaagctctgttgttaatgggatc
cgtgtaacagcagtacatcatgcgttgaaaaaggcctttctcacttgcttgaaatgtaca
catccaagtgctgctccgtggagagaacgtttagctggtgccctggaggaaatgcagtct
gaagggatggctgatcaggtgttccaccaagtctctgagattaatggaagtataaagaaa
gagaaagatgacgatctagatattaaggaagaaaaaccagcatcactttcatttgattca
ttgcacactaatttagggaggaaacgattaggatcacaggatggaggtgatttagctgaa
gatgaagatgttcctgaaaaacggtccaaaacgacaaccattgtctcagaacccaagaaa
gagttagatgaaagcacaagagtgtgttgggacaacaatgcttcaactgtaccacgttca
tcaagaagagaagtggataatggacctgttcagcaacttgttgcaatgtttggtgcttta
gttgctcagggtgaagaagccgttgcacctttggagattcttatttccagtatctcctca
gacttgctagctgaggtggtaatggctaatatgtgtaacctacctccaaataatccaagt
gctgaaggagatgatgaaccactgcatgacattagtataactggttctgatggcaaggct
aaatatccatcatcatttgtagattgcgtaatgtcgctttctagtacattcccatcaata
actgtacttcttgacgctaatcaatcaatatccaatgaggtgaaatctcaaggggaggaa
gaaatttctgcaactggagtggataataatgctgtgcattctggattgaatccttcatct
gaaaatgtgatgctgccctctgattttccatcttctgatgccaaaatacctggaatggag
agtgtgaacacaggtgtcccttctgacatccatgatgtgggcaatttagagagtggaata
cctggcctggattcttttggtcgtaatgttgccttgtcagaaactgtagctggttcctca
ttggcttcctctgatatagaagaagccagtcaagaacaagttatgggttttggtcaaaaa
tcacccctgaacattgttacatcaatatcaacagataggtccgaggagataagcccaaaa
gcagctgttacggatgtaaatagtgtggtgtcatcagcagcaccttctgacaggtcatct
cggttggttctgccaaagatgattgcacctgttgttgaccttgcagatgaacagaaggat
aatttgcaaaaatgggcttttattcgtattattgatgcttacaagcaaatatcaatagct
ggaggatcaaaagttcgattttcaatacttgcttatctaggagttgagcttcccttggac
ctagacccatggaaactattacaaaagcatgtcttggttgattacacaagtcatgaggga
cacgagttgactttgcgtgtcctctacaggttatttggtgaggctgaagaggagcctgat
ttcttttcttctacaacagctgcttctgtatatgaaacattcctcctaacagtggcagaa
gcactaagagattcttttccaccttctgataaagcctttagtagattgcttggtgaagct
ccttatttgccaaattcagttttaaaagttttggagaacatgtgttctcctggaaattca
gataaagttgaaaaggagtcacagagtggggatagagttacccagggccttagtgctgta
tggagtttgattctgctgaggccacctattcgagatacctgcttgaaaattgctctgcag
agtgcagtacatcaattggaggaagtgcggatgaaggcaatacgtctggtggcaaataaa
ctttatcctttaacatccatttctcatcaaatagaagattttgcaaaggaaatgctgtta
tcagtgatgagtggtgatgcatctgaaactgctgacagtgaaggatctgttgctgaaaca
ccaaagggacctgataatgagaagtctttgattgaaccatcatcggtgagtggcaacagt
aaggatttctgctctgataatcaccagtcatgtacacctgaaagtgtcttgctggtttct
gtctctgaggctcagagatgcatgtcattgtattttgctctgtgcaccaagaaacattct
ctctttcagcaaatatttgtaatctataaaagcacatcaaaagcagtcaagcaggcagtt
catcgtcatatccctatactagttcgtactatgggctcatctccagatctccttgaaatt
atttcagaccccccacatggaagtgagaacctcctaatgcaggtgttgcacacacttact
gatgggacagtcccttcaagggatttaatatttactatcaaaagattacatgattcaaaa
ttcaaggatgcggaggttcttattcctgtattggcatatcttccaaaagatgaggttatg
ctggtctttcctcacattgtaaatcttcctctggataagttccaagttgcacttgttcgc
atgttacagaaatcatcaaattctggtccagtgcttactccggctgaagtattgatagct
attcatggaattgatcctgaaaaggatggaattcccttgaagaaggtcacagatgcatgc
aatgcttgctttgagcagcgacagattttcactcaagaagttcttgccaaagttctgaat
caattggtcgagcaaatacctcttcctttattgttcatgcggactgtattgcaagctatt
ggtgcttttccgacactggtggactttataatgggtattctctctcgtcttgtgggaaaa
cagatctggaaatacccaaagttgtgggtgggattcttgaagtgtgcacaattaacacaa
cctcagtcatttagtgtattgcttcagctacctccagcacaactggaaaatgctttaaac
agatctgcagcacttaaggcaccattggtagctcatgctagtcaggcagatatccaatct
tcactacccaggtccgtgttggttgttctgggaattgcatcagatcctcaggtttcaagt
cagccacaaactagtcaaacacagacaagtgagacaggcaactccgagaaggatacgttg
acagaaaaatccaaagaatcttctacagctagctga
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