Prosopis cineraria: 129288701
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Entry
129288701 CDS
T09047
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129288701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129288701
Enzymes [BR:
pcin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129288701
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129288701
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
4HB_KIF14
Motif
Other DBs
NCBI-GeneID:
129288701
NCBI-ProteinID:
XP_054781395
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MDLEPAIVSASMSLLLQGRFLCTKVHKKWKVKQVTKSNFQESLRELKTHIPNSDFVAVSM
VKTGSFSASWHRVLPFDTAETAYCKAKHSAERFQLLQFAVCPFSIAESNKLIANPYNFLL
FPRDELKLGMPSYSFSCQTSYLTSMAREGFDFNACIYDGISYLSRVQEFKAKMQIGNYIS
NLNVNKSSSTSATADIVFVERIKSRIKHWIKCCEKGGKSTSTDDALLTSLRKIVMGSEMF
GSRPCLTINVCSDRQVQLILEMLLNVHNVVPMLVPAKGNTTQAICLVLTTSKEDKDLFER
ERQKLEEEENKKLCGFREVIELISASQKPVLSYNCLDDCTFIHSKFIASLPPEVNEFICS
FRSDFPQVIDVYHMVKKFGAMRNVTNITAALLYLKNHFLASVDVEIPDQGFHSATINEDK
IDGLDSLRICYLFMKICSILKISPCVSESGNKHLAPELQDFTNIFHPWTTDSKELVDEDI
SIWANNTRKVNCEHVIFLWGVQFGMTASTLKNLLQESHDILPEEFDVKLVAKDCAIVVFW
QPGLSKAFLNAVKSEQISGLLREFVSNGLRVASYDTYRTVCRLGLWEADLSESLDRAVEK
SGREFSNIYCHTDNVINFDIL
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggaccttgaacccgcaatagtttctgcttccatgtctctgttgttgcaggggcgtttt
ctctgcaccaaggtgcacaagaaatggaaggtgaagcaggtaacgaagtccaacttccag
gaatcgttgagggagttaaagactcatatcccaaactccgacttcgtagcagtatccatg
gtgaagacaggctctttctcggcttcgtggcaccgtgtgcttccctttgacacggcggaa
accgcctactgcaaggccaagcactccgctgagcggtttcagcttcttcagtttgctgtt
tgtccattttcaatcgccgaatccaataagttaatcgctaacccgtacaattttcttttg
tttcctagagatgaactgaaattggggatgccttcgtacagtttttcatgccaaacatcg
tatctgacttctatggctcgtgaaggtttcgatttcaatgcttgcatttatgatggtatt
tcatatctatctagagtacaagagtttaaagctaaaatgcagatagggaattacatatct
aatcttaatgtgaacaaatcttcttcaacctccgctactgctgatattgtttttgttgaa
aggattaaatcacggattaaacactggataaaatgttgtgaaaagggtggcaaaagcacg
agcacagatgatgctctcctcacgtcccttaggaaaattgtgatgggaagtgaaatgttc
ggttcaagaccttgcctcacaataaatgtttgcagtgatagacaagtgcagttaattctt
gagatgctgttaaacgttcacaatgttgttcctatgctagtacctgcaaagggtaatact
actcaggctatctgtcttgttttgacgacctcaaaagaggataaggatttgtttgagagg
gagcgtcaaaaattagaagaggaggagaacaagaaactttgtgggtttcgggaggtgatc
gagttgatttctgcttcacagaaacctgttctctcctacaactgccttgatgattgtaca
tttatccattcaaaattcattgcttcccttcctcctgaagtgaatgaatttatatgctct
tttcgctcagatttcccccaggtaattgatgtgtatcacatggtgaagaaatttggagcc
atgagaaatgtgaccaacataactgctgctttattgtacttgaagaatcatttcttggca
tctgttgatgtggaaattcctgaccaaggattccattcagctactataaacgaagacaag
attgatggactcgattcattaaggatatgctatttgtttatgaagatatgctctatattg
aaaatttccccatgtgttagtgaatccggcaataagcatttggcccctgagcttcaagac
ttcaccaacatattccatccatggacaaccgactccaaagagttggttgatgaggacata
agcatctgggcaaataacacaagaaaggttaattgtgaacatgtaattttcttatgggga
gttcagttcgggatgacggcgagcacgctgaagaatctacttcaggaatcccatgacatc
cttcctgaagagtttgatgttaaactggtggctaaagattgtgccattgttgttttctgg
caacctgggttgtcaaaagcttttcttaatgcagtgaagagtgaacaaattagtggattg
ttgagggaatttgtatccaatggcctcagggtggccagttatgacacttacaggacagtg
tgtaggttaggtttgtgggaggcagatctctcggagtcattagacagagctgtggagaag
tctggtagagagttttccaatatttactgccatactgataatgtaattaactttgatatt
ctttga
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