Prosopis cineraria: 129290922
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Entry
129290922 CDS
T09047
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129290922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcin03041
]
129290922
Spliceosome [BR:
pcin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
129290922
Complex C
U5 SnRNP specific factors
129290922
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
129290922
NCBI-ProteinID:
XP_054783963
LinkDB
All DBs
Position
Unknown
AA seq
2356 aa
AA seq
DB search
MWNNGQIAPPGTTGSSIPPPPAAQPSYTVLPPPPPPVPAETEADAEARLEEKARKWQQLN
SKRYSDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYK
LLENMPMPWEQVRDVKVLYHISGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHF
KRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLING
PSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPL
YRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCIYHTPMVMYIKT
EDPDLPAFYYDPLIHPITSANKERREKRTHEEEDEEWELPEGVEPLLKDTQLYTDTTAAG
ISLLFAPRPFNMRSGRARRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHH
RPPKAQKKKHLFRSLQATKFFQTTELDWVEAGLQVCRQGYNMLNLLIHRKNLNYLHLDYN
FNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYT
FSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFL
RGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGI
KQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERI
RRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRK
FSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRI
KRHXLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIK
PADSEPPPLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFEKFFDKIDLTMLNRLLRLVL
DHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEI
AGPPQMPNEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPN
NENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKD
NPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVF
ENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIK
IGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHE
EDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRIN
TLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGG
VEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSP
TINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQE
LDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKASNKY
WIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFP
GSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFV
DDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWK
TAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIE
KFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTI
VTEPHHIWPSLNDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPS
QQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISA
TNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGVSPPDNPQVK
EIRCIVMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHAKVL
ENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQ
MLLSDRFYGFYMVPDNGPWNYNFMGVRHASGMKYGVKLGTPREYYHEDHRPTHFLEFSNM
EEAETIAEGDREDTFT
NT seq
7071 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacggtcagattgcaccaccaggaactactggctcttccattccaccgcct
cctgcagcccaaccgtcgtacacggtgctgcctcctcccccgcctccagtcccggctgag
accgaggctgatgctgaggcgaggctcgaggagaaagccagaaaatggcagcaactgaat
tcgaagcggtacagtgataagagaaaatttgggtttgttgagacgcagaaggaggatatg
cctccggaacatgttaggaaaattatcagggatcatggggatatgtcctcaaaaaaatac
cgtcatgacaaacgtgtatatcttggagcactgaaatttattccacatgcagtttacaag
ctcctggagaatatgcccatgccatgggagcaggtccgagatgtgaaggtcttgtaccat
atatctggggcaattacttttgttaatgaaataccatgggttgtcgaaccaatatatctg
gcacaatggggtactatgtggatcatgatgagaagggagaagagggatcgacgccatttc
aagaggatgcggtttcccccatttgatgatgaggagcctcctttagattatgctgataat
ttgttagatgttgatcctctggagccgattcagctggaattggatgaagaggaagattct
gctgtatatacttggttttatgaccataaacctcttgtgaaaacaaagctcataaatggc
cctagctaccggaaatggcatctttcccttccaataatggcaactctgcatcggcttgca
ggacagcttttgtctgatctaattgaccggaattatttctatttgtttgacatggagtca
ttctttacagcaaaggcattgaacatgtgcatacctggtggtcctaagtttgagcccctt
taccgtgacatggagaaaggagatgaggattggaatgagtttaatgacatcaataaactc
attataaggtcacctctaaggacagagtacagaattgcatttcctcatctctataacaac
aggcctcgcaaagtgaagctttgtatttaccacactccaatggtcatgtatataaaaact
gaagatcctgatctaccggcattttattatgatccattgatacacccaataactagtgcc
aacaaggagcgccgtgagaagagaactcatgaggaggaggatgaggagtgggaattgcca
gaaggtgtggaacctttgcttaaagatacacagctttacacagataccacggcagctggt
atctccctactatttgctcctcgtccttttaacatgagatctggtcgtgcacgacgtgca
gaagatattccccttgtgtcagaatggtataaggagcattgtcctccttcatatccagtt
aaagttcgagttagttatcaaaagttgctgaaatgctttgtgttgaatgagctgcatcat
agacctcctaaggctcagaaaaagaagcacctatttagatctcttcaagcaaccaagttt
ttccaaaccactgaacttgattgggttgaagcaggtcttcaagtttgcaggcagggttat
aatatgttgaatctcttgatacacagaaaaaatttgaattatcttcaccttgattacaat
ttcaatctgaagcccgtcaaaacccttactacaaaagaaaggaaaaaatcacgatttggt
aatgcttttcatctttgccgtgaaatcctccggttgactaagcttgtagtggatgccaat
gtccagttccgtctgggtaatgtggatgcattccaactggctgatggtttgcaatatact
ttttctcatgttggtcagttgactggtatgtatcggtacaagtacaggcttatgcggcaa
attagaatgtgcaaagacttgaagcacttgatttactatcggtttaacactggacctgtt
gggaaaggtcctggctgtggattttgggcaccaatgtggagagtatggttgttctttctt
cgtggtattgttccacttcttgaacgatggttaggcaatttacttgcacggcagtttgag
ggacggcattcgaaaggtgtggcaaagactgttactaagcagcgtgttgagagccatttt
gacttggagcttcgagcagcagttatgcatgatgtgcttgatgccatgcctgagggcatt
aagcagaataaggccaggactatattgcagcatctgagtgaggcttggcgctgctggaaa
gcaaatattccttggaaggttcctggtttgccagttcccatagaaaacatgatcctccgt
tatgtgaagtctaaagcagactggtggaccaatgttgctcattataatcgtgaacgtatc
agaagaggggcaactgttgataagactgtgtgtcgtaaaaatcttggaagattgacacga
ctatggctgaaggctgagcaggagcggcaacacaattatttgaaagatggtccatacgtc
actcctgaagaagctgttgctatctacacaaccacagttcattggttggaatcaaggaag
ttctcccccattccgttccctcctttgtcttacaagcatgataccaaactgctaattctt
gctcttgagaggttgaaagaatcctacagtgttgcagtgaggttgaatcaactgcagaga
gaagagttggggctgattgaacaagcttatgacaatccacatgaggccctctcaagaatc
aagcgacatnctctcacccaacgtgctttcaaagaagttgggatagagtttatggatttg
tatagctacttgattccggtttatgagatagagcctctagagaagattacagatgcttat
cttgatcagtatttatggtatgaaggtgataagcgccatctctttcctaactggatcaag
ccagcagattcagagccacccccacttctggtttataaatggtgtcagggtataaacaat
ctgcaaggtatatgggataccagtgagggccagtgtgttgtgatgctgcagactaaattt
gagaagttctttgacaaaattgatttaacaatgctcaacaggcttctccgtctggttctt
gaccataacattgctgattatgtcactgcaaaaaacaatgttgttttatcatacaaagat
atgagccatacaaattcatatggtcttatacgtggtctgcagtttgcatcttttgttgtc
caatattatggacttgtgctagatttgttacttctcggacttactcgagccagtgaaatt
gctggcccaccacaaatgcctaatgaattcatcacttactgggacacgaaagttgagaca
aggcatccaattaggctttattctcggtacatagatcgggttcatatattatttcgcttt
actcatgaggaagcccgagacctcatacagcgttacctcactgagcatcctgatcctaac
aatgagaatatggtgggctacaacaataaaaagtgctggccaagagatgcaagaatgagg
ctcatgaaacatgatgtcaatcttgggaggagtgtcttctgggatatgaagaatcgtctt
cctcgaagcataacaactttagagtgggagaacagctttgtttctgtttacagcaaagat
aatccaaacttgcttttcagcatgtgtgggtttgaagttcggatactcccaaaaattcga
atgactcaagaagcgttcagcaatacaagagatggtgtttggaatttacaaaatgaacag
acgaaagagaggacagcagttgcctttttaagagttgatgatgaacacatgaaagtgttt
gagaatcgtgttaggcagattctcatgtcttccggatctactacgtttacaaaaattgtc
aataaatggaacacagctttgataggtcttatgacatacttccgggaggcaactgtacac
actcaagagctgttagatttgcttgttaaatgtgaaaataagattcagactcgtattaag
attggattgaactcaaagatgcctagcagatttcctcctgtcattttctacaccccaaaa
gaaatcggaggacttggcatgttgtccatgggtcacattttgattccacaaagtgatctc
cgatacagtcagcagactgatgttggtgtgacacacttcaggagtgggatgagtcatgaa
gaggaccagttgattcccaacctttatcgctacattcagccttgggagagtgaattcatt
gactcacagcgtgtctgggctgaatatgcattaaagaggcaggaggcacaagcacaaaat
aggcgtttgacccttgaagatctggaagattcatgggatagaggtataccgcgtataaac
actttattccaaaaggatagacacaccttggcttatgataaaggatggagggtgcgtaca
gacttcaaacagtaccaggttctgaaacaaaaccctttctggtggacacaccagaggcat
gatgggaagttgtggaacttgaacaattaccgtactgatgtaattcaagcccttggaggt
gttgaaggaattcttgaacatactctgttcaaaggaacatactttccaacctgggaaggt
ctgttttgggaaaaggcatcaggctttgaggaatctatgaagtataagaagttaacaaat
gcccagagatctggtctcaaccagatacctaatcgtaggtttactctttggtggtcacca
accataaatcgagccaatgtttatgtggggttccaagtgcagttagatctgactggtatt
ttcatgcatgggaagatacctactttgaagatatctcttattcagatattcagagcccat
ttgtggcagaagatccatgagagtgttgtcatggatctgtgtcaggttttggatcaggaa
ttggatgctttggagattgagactgtccagaaggaaacaatccatccgaggaaaagttac
aaaatgaacagctcttgtgcagacattcttctgtttgctgcccatcgatggccaatgtca
aagcctagtctggtggctgagtctaaggatgtttttgatcagaaggcaagcaataagtac
tggattgatgtacagcttagatggggggattatgactctcatgatattgagcgttacaca
cgggcaaaatttatggattatacaacggataatatgtctatatatccatctcctacaggg
gtgatgattggcattgatttggcatataacttgcactccgcatttggcaactggttccct
ggttcaaagccactgcttcagcaggccatgaataaaatcatgaagtcaaatcctgcgttg
tatgtcttgagagagcggataaggaaggggcttcagttgtattcttctgagcctacagaa
ccatacttgtcatcccaaaactatggagagatattcagcaatcagattatatggtttgtt
gatgacactaatgtgtatcgtgttacaatccataagacctttgaaggaaatctcacaaca
aaacccatcaatggtgccatcttcatttttaatccaaggactggccaattgtttctgaag
gttatccatacaagtgtctgggctggtcagaagcgtcttggtcagctggccaagtggaaa
acagcagaagaagttgctgctcttgtacgttctttgcctgttgaagaacagcccaagcaa
attattgtcactcgtaaaggaatgttggatccattagaggttcaccttctggacttcccc
aacattgttattaaaggaagtgagcttcagcttccattccaagcatgcttgaagattgag
aaatttggcgatcttattttgaaggctacagaacctcaaatggttttgttcaacatttat
gatgactggttgaaaagtatttcatcttacactgcattctccaggttgatattgattctc
cgtgcccttcatgtaaataatgagaaggcaaagatgttgctaaagcctgacaaaacaatt
gtcactgagccacatcacatctggccttctctcaatgatgaccagtggatgaaggtggag
gttgcattaagagatctcatactctcagattatgccaagaagaacaatgtcaatacttct
gccttgactcagtctgagattcgtgacatcatacttggagctgagattactccaccttct
caacagcggcaacagatagcagagattgagaaacaggcaaaagaagccagtcaactgaca
gctgtaacaacaaggacaacaaatgttcatggggatgagctcattgtcaccaccactagt
ccctatgagcaggctgcatttggttcaaagactgactggcgtgtcagggcaatttcagca
acaaatctgtaccttcgtgttaatcatatttatgtaaactcagaggatataaaggaaact
ggttacacctacattatgcccaagaacattttgaaaaagtttatctgcatagctgatcta
cgaacacaaattgctggatacctgtatggtgtaagtcctccagacaacccacaggttaaa
gaaatccgttgcattgtgatgccaccacaatgggggactcatcagcaagtccacctccca
tcagctcttccggagcatgatttcttgaatgatttggagcctttgggatggatgcatact
caaccaaatgaacttccacagttgtctcctcaggatctcacttcacatgccaaggtctta
gagaacaacaagcaatgggatggcgaaaagtgcattatcttgacttgcagttttactcca
ggctcttgttcattaactgcatacaagctcactccatctggttatgagtggggacgtgtc
aataaggatactggaagcaatcctcatggctaccttcctactcactatgagaaggttcag
atgctgctcagtgatcgcttctatggtttctacatggttcctgataatggaccgtggaat
tacaacttcatgggggtgagacacgcatctggcatgaagtatggagtgaagttgggaaca
ccacgagagtattaccatgaagatcacagaccaactcatttcttagagttcagcaatatg
gaggaagcggaaacaattgccgagggagatcgcgaggatacatttacttga
DBGET
integrated database retrieval system
