Prosopis cineraria: 129291057
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Entry
129291057 CDS
T09047
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03013
Nucleocytoplasmic transport
pcin03015
mRNA surveillance pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129291057
09122 Translation
03013 Nucleocytoplasmic transport
129291057
03015 mRNA surveillance pathway
129291057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129291057
03041 Spliceosome [BR:
pcin03041
]
129291057
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129291057
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129291057
Spliceosome [BR:
pcin03041
]
Complex C
Other components
EJC/TREX
129291057
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129291057
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
129291057
NCBI-ProteinID:
XP_054784150
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGEVKDNEAYEEELIDYEEEDEKATDAVSGKDGTESGKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALV
LCHTRELAYQICHEFERFSTYLPEIKVAVFYGGVNIKVHKELLANECPHIVVGTPGRILA
LTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQAMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEAEKSRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSSSDSDVLNQVQSRFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagtaaaggacaacgaagcctacgaggaggagctcatcgactacgaagaggaa
gatgaaaaagccaccgacgctgtctcgggcaaagatggtaccgaatccgggaagaagggt
tatgttgggattcacagttcgggatttcgagacttcctattgaaaccagaacttcttcga
gccatcgtggattcaggatttgagcatccttcagaagtgcaacatgaatgcatccctcaa
gctattttaggaatggatgtcatttgccaagcaaaatctgggatgggaaagactgctgtt
tttgttctttcaacacttcagcaaattgatcctgttcctggtcaagttgcggctcttgtt
ctttgccacactagagaactagcttatcagatatgccatgaatttgagaggtttagcaca
tatcttcccgaaataaaagttgctgttttctatggtggggtcaatatcaaggttcataaa
gaattgcttgcaaatgaatgtcctcatattgttgttggaacacctgggcggatattagcc
ctgactagagataaggatcttagcttaaagaatgtgaggcattttatacttgatgagtgt
gacaagatgcttgaatcacttgacatgagaagagatgtgcaagaaattttcaaattgact
ccccatgataaacaagcaatgatgttttcggccacactcagtaaagaaatacgccctgtt
tgcaagaaatttatgcaagatcctatggagatttatgtagatgatgaggctaaattgact
cttcatggtttagtacagcactacatcaaattgaaggaggcagagaagagccgtaagttg
aatgatcttcttgatgccctggacttcaaccaagtggtcatttttgtcaaaagtgtcagc
agagcagcagagttgaacaagttgcttgtggagtgcaactttccatcaatctgcatacat
tcaggaatgtcacaagaagaaagattgaaacgatacaagggattcaaggaagggaagcag
agaattcttgtggcaactgatttagtaggaaggggaattgatatagaacgtgttaatatt
gttatcaactatgacatgccagattcggctgatacttaccttcacagggtgggaagagct
ggtaggtttggcaccaagggtcttgctatcacgtttgtgtcttcttcctctgattctgat
gttcttaatcaggtgcagtcaaggtttgaggttgatataaaggagcttcctgagcaaatc
gacacttccacatatatgcccagctga
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