Prosopis cineraria: 129291340
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Entry
129291340 CDS
T09047
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129291340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129291340
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
129291340
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
129291340
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
EXOSC1
YDR124W_N
Motif
Other DBs
NCBI-GeneID:
129291340
NCBI-ProteinID:
XP_054784608
LinkDB
All DBs
Position
Unknown
AA seq
313 aa
AA seq
DB search
MRGLQLPLSQTQKVRLQKALQQLESLSSKVNSDASVTIADSISVNHEDGFLKGHGTTDLK
GEVVATVCGVVERVNKLVYVRALRSRYKPEVGDIVVGRVIEVSQKRWKLEINYSQDATLM
LSSMNLPDGIQRRRTALDELNMRSIFEENDVVCAEVRGFQHDGLHLQARSQKYGKLKRGQ
LLTVTPYLVKKQKQHIHHIEQYGIDLILGCNGFIWVGEHVEAKDDMIDDQANQSEGQEQN
FTALETRKYICRTANAVRVLSNLGFNMTLEIIKETVNLSLSLNLDMHEMLGYEFCVLVAE
KEAERRSSIKKKR
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgagagggttacagctaccgttgagccaaactcagaaggttcgattgcagaaagctctg
caacagctcgagtctctatcttccaaggtcaattctgatgcttctgtcaccatagctgat
tccatatcggttaaccacgaagatggctttctcaagggacatggtaccactgacctcaaa
ggcgaagttgttgccactgtatgcggcgtggtcgagcgcgttaacaagcttgtgtatgtc
cgcgcattacgctccaggtacaaacctgaggttggagacattgtggtagggcgtgttatt
gaggtttcccaaaagcgttggaaattggagataaattacagtcaagatgccactttgatg
ctttcttctatgaatttgcctgatggcatccagagacgacggactgctctggatgaactc
aacatgcgtagtatttttgaagagaatgatgttgtttgtgctgaagttcgtggtttccag
catgatggtttacaccttcaagcaagaagtcagaaatatgggaaacttaagagaggtcaa
ctgcttactgtcactccttacttagtgaagaagcagaagcagcatatccatcatatagag
cagtatggcattgatttgatacttggttgtaatggattcatatgggtgggggaacacgtt
gaagccaaagacgatatgatagacgatcaagcgaaccaatctgaagggcaggagcaaaat
tttacggcattagagacaagaaaatacatatgcaggactgctaatgctgttagagtatta
tccaatttggggttcaatatgactttggaaattatcaaggaaacggttaatctcagcctt
tctttgaatcttgatatgcatgaaatgctgggttatgagttctgtgttctggttgctgaa
aaagaggctgaaaggagaagctcaattaaaaagaagcgatag
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