Prosopis cineraria: 129292897
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Entry
129292897 CDS
T09047
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pcin
Prosopis cineraria
Pathway
pcin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129292897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcin03021
]
129292897
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129292897
Transcription machinery [BR:
pcin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129292897
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
129292897
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
129292897
NCBI-ProteinID:
XP_054786556
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MGSQRLLLSRENPRPLGFPPGRVLPSAAAKSIPNEMAPKPLASSILERFKALLKQRDDEQ
RALSDDDVLPPSTDEIVQLYEIVLSELTLNSKPIITELTIIAGDQKEHGRGIADAICDRI
IEVPSEHKLPSLYLLDSIVKNIGGEYVGYFSSRLPEVFCVAYRQVQPNLHHAMRHLFGTW
SAVFPPSVLRKIEVQLRFSQAVNNQNVSSSINPPRVSEATQRTHGIHVNPKYLRQLENST
MDTDGGEMLDSTGSMEHTNFGVGANKMHQASISRHGKQYSGDGLSQFQFSTNGHQRQNPR
ALIDAYGSDKRTEISSNKPLVEPLDINGIDNKVVSTSWQNTEEEEFNWEDMSPTLVEHKR
SNGVLPSSIILSRERSSGIVAANTAALGQDTRSGWVSQSQLPLMNDSSIIAEDAFVLPDN
GGGSLGQITGLHNHLNHGLGSHPPHDALKISHHLPNSSHHLVNIRGRARNAHLSHIDSIP
ITKVSSYGLEIRPPTLPASFRARPPVNVHATRPPSLNPIFSLQKHVRSQFEAINSSNTIL
DQGPTKSSFMPEQLLDSDENSNISKLTFRQIPNQLSGLISSNPQNRGQALQPQTFPSQDV
RESYSELQAPAASQFSHGGSLQRHGAAISATVSMSLPIGQFPLPVQNIRKNVFPMQQGAL
PPSFSGPCPPSQVMPHTNDSPYTSTKQPAGAFSGLINSLMAQGLISLIGPPAVQDSVGTE
FNPDILKIRHESAISALYFDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKSRKQKPS
RKWFVSERMWLSGAEALGTEAVPGFLPTETMEENKEDEEMVVPADEDQNTCALCGEPFEE
FYSDETEEWMFKGAVYLNAPKGGVADMDRSQLGPIVHSKCRSESSAVPTEESRQDDGDAN
EEGSQRKRMRI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgggctctcaaaggttgttactttcccgtgaaaaccctaggcccctgggtttccctcct
gggcgagtgctcccttctgccgctgcaaaatccatacccaatgagatggctccgaagcca
cttgcttcttcgatattggaacggttcaaggctctgctcaagcagcgagacgatgaacag
agggctttgtccgacgacgatgtgcttccgccgtccaccgatgagattgttcaactttac
gagatagtcttatccgagcttactttaaattcgaagcccatcatcaccgaacttaccatc
attgcgggagaccagaaggagcatggcaggggaatagctgatgcaatttgcgatcgaatt
attgaggtgccttcggagcacaagcttccttcactgtatcttttagacagtattgtgaag
aatattggtggggagtatgttggatacttctcctcacgtcttcctgaagtcttctgtgta
gcatatcggcaagtccagcctaatttgcatcatgcaatgcgtcatctctttggtacctgg
tcagctgtctttccaccttctgtccttcgcaagattgaagtgcagctgcgtttttctcaa
gcagttaataatcagaatgtatcatctagcattaatccccctagggtgtctgaagctaca
cagcgaactcatggcattcatgttaatccaaaatacctgcggcagttggaaaactcaacc
atggacactgatgggggtgaaatgttggattcaacaggaagcatggaacatacaaatttt
ggtgttggagctaataagatgcatcaagcttcaataagcaggcatgggaaacagtattct
ggtgatggtctgagtcaatttcaattttccacaaatggacatcaacgccaaaatccaaga
gctctcattgatgcttatggcagtgacaaaaggactgaaatttcaagcaataagccgctg
gttgaaccacttgacataaatggtatagacaacaaggtggtgtcaacatcatggcagaat
actgaagaagaggagtttaattgggaagatatgagtccaacattagtagagcataagaga
agtaatggggtcttaccatcatcaattattttgtctagggaaagatctagtggtattgtt
gcagctaatactgctgctttgggtcaagataccagaagcggttgggttagtcaatctcag
cttcctctcatgaatgattcttctattatagcagaagatgcatttgtgttgccggataat
ggtggcggatcattaggtcagataactggattgcataatcacttaaatcatggtctgggc
tcccatcctcctcatgatgccttgaagatttcacatcatttgcctaactcttcacatcac
cttgttaatattagaggtcgagcaaggaatgctcatttgtctcatattgatagcatcccg
attactaaagtaagctcatatgggcttgagattcgtccaccaactttacctgcatctttt
cgagccaggccccctgtaaatgtgcatgctactcgtccaccctccttaaatcctattttt
tcattgcagaaacatgttaggagtcagtttgaagcaataaatagtagtaacaccatttta
gatcaaggtcctactaaatcttcattcatgcctgaacagctgttggatagtgatgagaac
agtaatattagtaaattaacatttcggcagattcctaatcagctatcagggctaatttca
tcaaacccgcaaaaccgtgggcaagcacttcaacctcaaacttttccatctcaggatgtg
cgagaaagttattctgaattgcaagctccagcagcttctcaatttagtcatgggggttct
ttgcaaagacatggtgctgctatcagtgcaactgtgtccatgtcgttacctattggacag
tttcctttaccagtccaaaacatcagaaaaaatgtttttcctatgcagcagggagccttg
cctccttcattttcaggtccttgccctccatcacaagtgatgcctcatacaaatgatagt
ccttatacctcaactaaacagccagctggtgcattttctggtcttatcaattcacttatg
gcacaaggtttgatctcattgattggaccacccgctgttcaggattctgttggaactgag
tttaatccagatattctgaagatccggcatgagtctgcaattagtgctttatattttgac
ctccctcgacaatgcacaacttgtggcctccgattcaagtgtcaagaggagcacagtagt
catatggattggcatgtgactaagaatcggatgtctaaaagtcgtaagcagaagccttct
cgtaagtggtttgtgagtgagagaatgtggcttagtggtgcggaggcattgggaactgaa
gcagtacctggttttttgccaactgaaacgatggaggaaaataaagaagatgaagagatg
gttgtgccagctgatgaagatcagaatacatgtgcattatgtggagagccttttgaagag
ttttatagtgatgaaactgaggaatggatgtttaaaggagctgtatacctaaatgcgccc
aagggaggagtggcagacatggataggtcgcagttaggtccaattgttcattctaaatgc
agatctgaatctagtgctgttcccactgaagaatctagacaggatgacggggacgctaat
gaagagggtagtcaaagaaaacgaatgcggatttga
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