Prosopis cineraria: 129294490
Help
Entry
129294490 CDS
T09047
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03013
Nucleocytoplasmic transport
pcin03015
mRNA surveillance pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129294490
09122 Translation
03013 Nucleocytoplasmic transport
129294490
03015 mRNA surveillance pathway
129294490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129294490
03041 Spliceosome [BR:
pcin03041
]
129294490
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129294490
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129294490
Spliceosome [BR:
pcin03041
]
Complex C
Other components
EJC/TREX
129294490
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129294490
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
129294490
NCBI-ProteinID:
XP_054788890
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MGETKDEGYEEELLDYEEEEDKAPDSVGTKVNGEAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVSGQVAALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDRLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQSRFEVDIKQLPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaaaggatgaaggatacgaggaagagcttcttgactatgaagaggaagaa
gacaaagcccctgattccgttggaaccaaagtcaatggtgaagctgtgaagaagggctac
gttgggattcatagttcaggattcagagactttcttctgaagccagagcttcttcgtgcc
attgtagactcaggatttgagcatccttctgaagtacaacatgaatgcattcctcaagca
atccttggaatggacgtgatttgtcaagctaaatctggaatgggaaaaactgctgtcttt
gttctctcaaccttacagcagattgatcccgtttcaggccaagttgctgcacttgttctg
tgtcatacaagggaattagcataccagatatgccatgagttcgagaggttcagtacctac
ttgcctgatctcaaggttgctgtcttctatggtggtgtcaacattaaagttcacaaggat
ctgttgaaaaatgagtgtcctcatattgttgttggaacacctggaagaatacttgcattg
gctagggataaggatctttcattaaagaatgtcaggcattttattttggacgagtgtgac
aagatgctggaatcactggacatgaggagagatgtgcaagagatcttcaagatgactcct
catgataagcaagttatgatgttttctgcaacactcagcaaggaaattcgcccagtctgc
aagaaatttatgcaagatccaatggaaatttatgttgatgacgaggccaagttgaccctt
catggacttgtgcagcactacatcaaattgaaagaggaagaaaagaaccggaagttgaac
gaccttcttgatgcactagacttcaaccaagttgttatctttgtgaagagtgtcagtaga
gcagctgagcttgacagactacttgtggagtgcaacttcccatctatatgcatccactct
ggcatgtcacaggaggaaaggttaaagcgttataaaggctttaaggagggacatactagg
attcttgtggcaacagacttagttgggaggggaattgacatcgagcgtgttaacattgta
ataaactatgacatgcctgattctgcagacacctacttgcacagggttggcagagctgga
aggtttggcaccaaaggtcttgcaattacatttgtttcgtgttctgctgatgtcgatgtt
cttaacaatgttcagtcaaggtttgaagttgatataaagcagcttccggagcagattgat
acctctacatacatgccatcatag
DBGET
integrated database retrieval system
