Prosopis cineraria: 129297198
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Entry
129297198 CDS
T09047
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129297198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcin03041
]
129297198
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129297198
Spliceosome [BR:
pcin03041
]
Complex C
Other components
Step II factors
129297198
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
DEAD
HA2_C
AAA_22
AAA_19
ABC_tran
cobW
AAA_16
AAA_30
SLFN-g3_helicase
nSTAND3
NPHP3_N
AAA_23
Helicase_RecD
ATPase_2
AAA_29
SRP54
FtsK_SpoIIIE
Cas3-like_C_2
AAA_33
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
129297198
NCBI-ProteinID:
XP_054791540
LinkDB
All DBs
Position
Unknown
AA seq
698 aa
AA seq
DB search
MANLPIVQYEEKIIETVEQNPVVVIIGETGSGKSTQLSRMFHRRGYSKSGIIGITQPRRV
AAVSVARRVAQELRVQLGEEVGYAIRFEDRTSDNTRIKYLTDGVLLRESLANPELNQYSV
IILDEAHERSLNTDILLGLMKRLVRLRASNLKVLVTSATLDGNKVSKFFSDCPVLTIPGK
LYPVQIFYSNERPSSYLESSLKTAIDIHVGQPEGDILIFMTGQDDIEKLVSKLEDKVQAL
EEGSCMDAIILPLHGSLPPEMQVRVFSPSPPDCRRIIVATNIAETSLTVDGVVYVIDAGY
VKQRQYNPSTGMYSLDVVQISKVQASQRAGRAGRTRPGKCYRLYPSKVYEDNFLDVTVPE
IQRSSLAGCVLYLKSLDLPDIDILKFDFLDPPSSETLEDALKQLYLIDAIDEHGTITNVG
QKMAELPLEPSLSRTLMEANNYGCLSQALTVAAMLSAETSLLSGWSKTEKKRKHTMSNLP
DGSGFGDHIQLLQIFERWDQSDYDIGWCKDNDLQVRGMLFVKDIRKQLSQIMQKIAKGPL
DVRAHGKSEEKQGYKNLRKALCVGFANQLAERKIHHNGYRTLGFKAQVVQVHPSSVLKPD
ELGKFPDYVVYHELIATPRPYMRNVCSVEMRWVMPIINKLGTLDVHKLSGGLGHIDEEPE
EKAPDLPKKGANVAAIPDDRKSQIQAARERFLARKGKK
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaccttccgatagttcaatacgaagagaaaatcattgagacggttgagcagaac
ccggttgtggtaataatcggcgagactggttccggcaagagcactcagctctcacggatg
tttcaccgaagaggctacagcaaatctggtatcattggcatcacccagcctcggcgggtc
gccgccgtctccgtcgctagacgagttgcacaggagcttcgtgttcagcttggagaggaa
gttggatatgccattcgatttgaagacagaacttcagacaacacgcgtattaagtacctt
actgatggagttctacttcgtgaaagtctagctaatcctgagctaaatcagtattctgta
attatattggatgaagctcatgaaaggagtctaaatacggatattttgcttgggctcatg
aaacgtttggttagacttcgtgcttctaatctaaaagttttagtcacatcagcaactctt
gatggtaacaaagtatcaaagttcttctcagattgccccgtattgaccatcccaggaaag
ttgtatccagtgcagatattttatagcaatgaacgtccttcaagctatctcgaatcgtct
ctgaaaacggcaattgatatacatgttgggcaaccagaaggtgatattttaatcttcatg
actgggcaggatgatatagagaaattagtttccaagttagaagataaagtacaagccctt
gaggagggttcttgcatggatgctataatccttcccctacatggttctttgccacccgaa
atgcaggtgcgtgtgtttagcccttcacccccagattgcaggcgaattattgttgcaaca
aatattgctgaaacttccttgactgttgacggtgttgtgtatgttattgatgctgggtat
gtaaagcaaaggcagtacaatccatcaactggcatgtattcgcttgatgttgtccagatt
agcaaagtgcaggctagtcagcgcgctggacgggctggacgaacacgtccagggaaatgc
taccgtctgtacccttccaaagtttatgaggacaatttcttagatgttacagtgcctgag
atacagagatcttctcttgctggctgtgttctctacttaaagtcattggacctcccagat
attgatatcctcaaatttgactttcttgatccgccttcgtctgagactttggaagatgcc
ttgaagcaattatatcttattgatgctattgatgaacatggaacaataacaaatgttgga
caaaaaatggctgagcttccgttagaaccttctctatcaagaactttaatggaggcaaat
aattatggttgcttatctcaagctttgacagttgctgccatgttgtcagctgaaacatca
ttgttatcagggtggagtaagaccgagaaaaagaggaaacacaccatgtccaaccttcct
gatggttcaggtttcggcgaccacattcagttgctgcagatctttgagcgctgggatcag
agtgattatgacattggttggtgtaaagacaatgatttgcaggtgcgagggatgttgttt
gtcaaagacattcgtaaacagttatcccagataatgcagaaaatagctaagggacccctg
gatgtacgagcacatggaaaaagtgaagagaagcagggttataaaaatttgaggaaggct
ttgtgtgtaggctttgcaaatcagctggctgaaaggaagattcatcataatggttatcga
actctggggtttaaagcccaagtagttcaggtgcatccatcctctgtgcttaaaccagac
gaactgggaaagttcccagactatgttgtgtaccatgaactgattgcaactccacgtcca
tacatgagaaacgtgtgttctgttgagatgagatgggttatgccaattatcaacaagctt
gggaccctagatgtccacaaattgagtggtggacttggtcacattgatgaggaacccgag
gaaaaagctccagatttgcccaagaagggtgccaatgttgccgctattcctgatgaccgt
aaaagccaaatccaagctgctagagaacggtttcttgctcgcaaaggcaagaaatga
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