Prosopis cineraria: 129298756
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Entry
129298756 CDS
T09047
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129298756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcin03041
]
129298756
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129298756
Spliceosome [BR:
pcin03041
]
Complex C
Other components
Step II factors
129298756
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
AAA_16
GIPC1_GH2
Sigma54_activ_2
TsaE
Cas3-like_C_2
ABC_tran
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
129298756
NCBI-ProteinID:
XP_054793162
LinkDB
All DBs
Position
Unknown
AA seq
1182 aa
AA seq
DB search
MAIEEDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRNSENVEEFDAKLKENG
AEMPDYFVKTLLTIIHAILPPRPKSEKESSKDSAADGSNTKFKALAIADDRNRAKELEKE
LEMEARQNHGEREREDEDKYRSRDRDRRDRRRDRYEREERHRERDRDRDYEYEDERRDYR
SNGRHGDRHERRRRDGHGENRYGKENGDEDRDRKSHRDRRYGSNEPELYMVYKGRVSRVM
DTGCFVQLDDFRGKEGLVHVSQMATRRISNAKDVVKRDQEVYVKLISISGQKLSLSMRDV
DQHTGKDLLPLKKSSDDDAFRMNPQDSKEGPVTRTGLSGIKIVEEDDYVGSSRRPLKRMS
SPEKWEAKQLIASGVLSVTEYPTYDEEGDGVLYQEEGAEEELEIEMNEDEPAFLHGQSRY
SMDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPE
SGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQ
AVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGC
RLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTIHTDV
LFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDY
LDAALITVLQIHLTEPEGDVLLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSAL
PSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVI
TPISQASAKQRAGRAGRTGPGKCYRLYTEAAYRNEMSPTTIPEIQRINLGTTTLTMKAMG
INDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLAS
VDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKN
FSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAA
RKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVEL
APRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggctatcgaggaagatggactgaagaagcttgagtacttgtctctcgtttctaaggta
tgcactgagctagaatcccacaccggcaccggcgataaagtcctcgctgagtttattaca
gagttgggtcggaattctgagaatgtggaggaatttgatgccaaattaaaggagaatgga
gcggagatgccggattattttgtcaaaacacttctgactatcatacatgccattcttcct
cccaggcccaagtcggagaaggaatcgagtaaagatagcgccgccgatggaagcaatacc
aagtttaaggcccttgctattgcggacgataggaatcgagcaaaagaactcgagaaggaa
ttagagatggaggctagacaaaaccatggagagagggaacgggaagacgaggataaatac
agaagtagagatagagataggagagacaggcgaagggataggtacgaaagagaggagagg
catagagaaagagacagagacagagactatgaatatgaggatgagagaagggattaccga
agtaacggaagacatggggacagacacgagaggcgtaggagagatggccatggagagaat
cgatatggaaaggagaacggcgatgaagatagagacaggaaatctcacagagatcgaagg
tacggctctaatgaaccagaattgtatatggtttataaaggtagagtgtcaagggttatg
gatacaggatgctttgttcagttagatgatttcagaggaaaggagggtttagtacacgtt
tcccagatggcaacgcgaagaattagtaatgctaaggacgttgtgaagagggaccaggag
gtttacgtgaagctaatatcaatttctggtcagaagttgagtctgtcaatgagagatgtt
gatcagcacactgggaaggatcttcttcctttgaagaagagctcggatgatgatgctttc
cgaatgaatcctcaagattcaaaggagggaccagtaaccaggacaggtctttcggggata
aagattgtggaagaggatgattatgttggttcttcacgcagacctttaaagagaatgagc
tctcctgagaaatgggaagcaaagcagttaattgcttcaggtgttttaagtgttacagag
tatccaacttatgatgaggagggagatggagtgctataccaagaggaaggagccgaagaa
gaacttgagatcgaaatgaatgaggacgaacctgcttttctgcatgggcagagtaggtat
tcaatggacatgtcacctgttaagatcttcaagaatcctgaaggttccctaagtcgtgct
gctgcactacagtctgcacttataaaggagcgcagagaagtacgagaacaacaacaacgc
acaatgcttgattctattccgaaggatctcaatcgtccttgggaagaccccatgccagag
tcaggtgaacgacatctggcacaggagcttaggggggttggtttatcagcctatgacatg
cctgaatggaagaaggatgcttatgggaagaccatcacttttggacaaagatcaaagctc
tccattcaggaacagaggcagagcctaccaatctacaaattaaagaaagagctgattcaa
gctgtgcatgacaatcaggttctggtggtgattggtgagacaggttcaggtaaaacaact
caagtcacacagtatctcgctgaagctggttacactacaagaggtaaaattggatgcact
cagcctcgtagggtggctgctatgtcagtggcaaaacgagttgctgaagagtttggttgt
cgattaggtgaggaagttggttatgccattcgatttgaggattgcaccggaccagatact
gtgatcaagtacatgacagatggtatgcttcttagggaaatattggttgatgagaatctg
tcacaatattctgttataatgcttgatgaagctcatgaaagaactattcatactgatgtt
ctttttggactattgaagcagctggtgaaacgtagacctgacttgcgattgattgtcaca
tcagctacactagatgctgagaaattttcagggtatttctttaactgtaacatttttaca
attcctgggaggacttttcctgtggagatactttataccaagcaaccagaaagtgattat
ttagatgcagccttaatcactgtcctacagattcatttgacggaaccagaaggagatgtc
cttctcttcttgactggtcaagaggaaattgattttgcatgccagtctctttacgagaga
atgaaaggattaggtaaaaatgttcctgaattgattattctgcctgtctatagcgctctt
cctagtgaaatgcagtccaggatatttgatcccgctcccccaggcaagagaaaagtggtt
gtggcaactaatattgcagaggcttctttgacaattgatggtattttttatgtaattgac
cctggatttgctaagcaaaatgtatacaacccaaaacaaggacttgattctttggtgata
actccaatttcacaagcatcagccaagcaaagagctgggcgtgcagggcgtactgggcct
gggaaatgttaccgcctctatactgaggcagcatatagaaatgagatgtctcctactact
attccagaaattcaaaggataaatcttgggacaactactcttacgatgaaagctatgggc
ataaatgatcttctgtcctttgattttatggatcctccttcaccccaggctctcatttca
gccatggaacagctgtacagccttggggcattggatgaagagggccttttaactaaatta
ggaaggaaaatggcagaatttcctctagatccaccattgtccaagatgctgcttgccagt
gtggaccttggttgtagtgatgagatactgaccataattgccatgattcaaactggcaat
attttttacaggcctagggaaaaacaagcccaagctgatcagaagagggcaaagtttttc
cagcctgagggtgaccatcttactctacttgctgtgtatgaggcttggaaagctaaaaat
ttttctggtccctggtgttttgagaattttgttcaatctcgatccttgagaagggcacag
gacgtcaggaaacagcttctcaccattatggataagtacaaattagatgttgtaagtgct
ggaaagaacttcactaagatcaggaaggctattactgcaggatttttctttcatgcggct
agaaaggaccctcaagaaggttacagaaccctagtcgagaaccagcctgtatatattcat
cccagttcagctttgttccagagacagccagattgggtcatctaccatgagcttgtgatg
acaacaaaagaatatatgcgtgaggtcactgttatagaccccaaatggctagttgaattg
gctccaagattcttcaaagtggcagatcctacaaaaatgagcaagcggaagagacaagag
cgtatagagccactttatgacagatatcatgaaccaaactcgtggcgtttgagtaaacgc
cgtgcttga
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