Prosopis cineraria: 129299260
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Entry
129299260 CDS
T09047
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129299260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129299260
03012 Translation factors [BR:
pcin03012
]
129299260
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129299260
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129299260
Translation factors [BR:
pcin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129299260
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
nSTAND3
AAA_16
T2SSE
ATPase
Motif
Other DBs
NCBI-GeneID:
129299260
NCBI-ProteinID:
XP_054793695
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
ESPEGKMMLGFRKSLPAFKEKEGLLQAIARNQVIVVSGETGCGKTTQLPQYVLESEIESG
RGAFCNIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGIL
LRRLLSDRNLDGTTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFS
NYFXGAPTFHIPGFTYPVRAHFLEDVLEMTGYKLSPFNQIDDYGQEKMWKTQRQLAPRKK
KNQITALVEDALSKSSFESYSSRTRDSLASWAPDCIGFNLIEAVLCHICRKERPGAVLVF
MTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQRLIFEKPPPNVRKVVLATNM
AEASITINDVVFVIDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYH
LYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPESRAVQNAIDF
LKMIGALDEKENLSDLGKFLSMLPVDPKLGKMLIMGAIFRCFDPILTIVAGLSVRDPFLL
PQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKESEREGSAYEYCWRNFLSAQTLQAIH
SLRKQFSFILKDAGLLDSDASINNKLSHNQSMVRSVICSGLFPGIASVVHRETSMSFKTR
DDGQVLLYANSVNERYQTISYPWLVFGEKVKVNAVFIRDSTGVSDSVLILFGGALVNGTQ
AGHLKMLDGYIDFFMDPSLADCYMKLKEELGKLVQKKLEDPKIDIHKEGKYLMLAVQELV
SGDQCEGRFVFGREXRKLKAANDESKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTN
EFRALVEFKGMQXVGKPKRNKQLAERDAAIEALAWLTHTSDNNQDEDDSSSPDVTDNMLK
LLGGRRKSKGR
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
gaatcacctgaaggcaagatgatgctgggattccggaaatctctgccagcattcaaggag
aaggaaggcttacttcaagctatagcacgaaatcaggtgattgtagtatctggagaaact
ggctgtggtaaaaccacacaacttcctcaatatgtattagagtcagagatagagtctggt
cgtggagcattttgtaacattatttgcacacagcctcgaaggatatctgcaatggctgtg
gctgagagagtatcagcagagagaggagagcctcttggtgaaacagttggtttcaaagtt
cgattagaaggaatgaaggggaaaaacacccatctgcttttctgtaccagtggtatatta
ctccgacggttgctgagtgatcgaaacctagatggtacaacccatgtttttgttgatgaa
attcatgagcgaggcatgaatgaagacttcttactgattgtgttaaaggatcttcttcca
cgtcgtcgggatttaagattggttttaatgagcgccaccttgaatgctgagctattttct
aattattttnggggtgcaccaacatttcatattccaggtttcacctatcctgtgagagct
cattttttggaagatgttttggaaatgactggatataagttaagtcctttcaaccaaatt
gatgattatggtcaagagaaaatgtggaaaacacaaaggcagctagcaccaaggaaaaag
aagaatcagatcactgctcttgttgaggatgctctttctaaatcaagttttgaaagttat
agctctaggacccgtgattcacttgcatcttgggccccagattgcataggatttaatctc
attgaagctgttctgtgccatatatgtcggaaggaacgaccaggtgctgttttagtattt
atgactgggtgggaggatataagttgtttaagggatcagctcaaagctcatcctctctta
ggagatcctaatagggttctgcttctaacatgtcatggttcaatggcaacttctgaacag
agactcatatttgagaaaccaccaccaaatgtaaggaaagtagtccttgcaactaatatg
gcagaggcaagtattactatcaatgatgtagtatttgtgattgattgtggaaaagcaaaa
gagactacttatgatgctttgaataacacaccttgtctactaccttcttggatatcacaa
gcatctgctcgtcaaagaagggggagagcaggtcgtgtacaaccaggagaatgctaccac
ctttaccccaaatgtgtttatgaagctttttctgaataccaacttcctgagctactgaga
acacccttgaactctctttgcttgcaaataaagagtttgcaggtggagagcataggagag
ttcttatcagcagctctgcaggcaccagagtcacgggctgtccaaaatgctattgatttt
ctcaagatgattggggcattagatgagaaggaaaatctttctgatcttgggaagtttctc
tcaatgcttccagtggatcccaagctgggaaaaatgttaattatgggtgctatatttcgt
tgctttgatcctattcttacaatagttgctggcttaagtgtcagggatcctttccttttg
ccccaagacaagaaggatttggcagggacagcaaagtctagattttctgcaaaagattac
agtgatcacatggctcttgtccgtgcatacgagggatggaaagaatctgaaagagaagga
tctgcttatgaatactgctggagaaatttcctctctgcccagactcttcaggctatccac
tctcttcggaagcagtttagcttcatcttaaaagacgcaggcttgttagattcagatgca
agcattaacaacaaactgagtcacaatcaatctatggttcgttcagtcatttgttctggt
ctctttcctggcatagcatcagtagtgcacagggagacgtccatgtcatttaaaacaagg
gatgacggccaggttttattgtatgcaaattcagtgaatgagcgttaccaaaccatttct
tatccatggctggtttttggtgagaaagtaaaagtcaatgctgttttcatacgtgattcc
actggtgtgtctgattcagtacttatcctttttggtggcgccttagttaatgggacacag
gctggacatctaaaaatgttggatggctatattgactttttcatggatcctagtttggca
gactgctatatgaagctaaaggaagagcttggtaagcttgtccaaaagaagcttgaagat
cccaagattgacatccacaaggaagggaagtacttgatgcttgctgttcaagaacttgtg
tcaggggatcaatgtgaaggaagattcgtatttggccgagaanacaggaagctgaaggca
gctaatgatgagagtaagttcacaaaagatgggacaaaccccaagagcttgctacaaaca
ctgttgatgcgagcagggcactctccaccaaagtacaaaacaaaacaccttaaaacaaat
gagtttagggctctagtggagttcaaaggaatgcagnttgttggcaaacccaagagaaac
aagcagctagcagagagagatgctgccatagaggcattggcttggttgactcatacctct
gacaataatcaagatgaagatgatagctcttctcctgatgtcactgacaacatgctaaaa
ctgctagggggacgccgaaaatctaaaggtcgctga
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