Prosopis cineraria: 129301798
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Entry
129301798 CDS
T09047
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
pcin
Prosopis cineraria
Pathway
pcin03420
Nucleotide excision repair
pcin04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
129301798
09124 Replication and repair
03420 Nucleotide excision repair
129301798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pcin04121
]
129301798
03400 DNA repair and recombination proteins [BR:
pcin03400
]
129301798
Ubiquitin system [BR:
pcin04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
129301798
DNA repair and recombination proteins [BR:
pcin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
129301798
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
NBCH_WD40
WDR90_beta-prop_4th
WD_LRWD1
Beta-prop_SPT8
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
129301798
NCBI-ProteinID:
XP_054796375
LinkDB
All DBs
Position
Unknown
AA seq
449 aa
AA seq
DB search
MWKQIRDREEGKIRPESFVHRFKSNRIAQLQLSNYKDIVSPHKGAVNSLQIDLTEGRYLL
SAASDASIAIYDVQRATDYEAGGLISKHKCIFAVDKQHNLGHKYAISSAIWYPVDTGLFI
TGSYDHHINVWDTNTTQVVMNFKMPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDIASG
AFAHTLSGHRDGVMTAEWSTSNEWVLVTGGCDGAIRFWDIRRAGCFLVLNQSSTQLGRRP
PVVKCSKITKDSTCKSLAGHNLSIKSHAGQRKLSNGSGSRQLSIGKVSAKGPMKQRLHPG
MLSTQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRLRLWDVESGCNTLVNFETVRLQTNK
PIQLATTRDSTLVFVPCMRSVKSFNVWSGYTHATFRGHYECVNSCWFSEQDQELYTGGND
KQILVWSPPRVIADEANELPMEDRDNWSD
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgtggaagcagatcagagacagagaagaggggaaaatccgcccggaatcattcgttcat
cgctttaagtccaatcgcattgcgcagctccaactttccaattacaaagatattgtttct
cctcataaaggcgccgtaaactcgctccagattgatttgacagagggaagatacttgtta
tctgctgcatctgatgcttctatagccatatacgatgttcaacgggccacggattatgaa
gcaggtggtctaatatctaaacacaagtgcatatttgctgttgacaagcaacacaatctt
gggcacaaatatgccatatcctcggctatatggtatccagttgacaccggtctattcatt
acaggttcatatgatcatcatattaatgtttgggatacaaataccacccaggtggtaatg
aatttcaaaatgcctggaaaggtttataggactgcaatgtcttcattggcaacatctcac
atgcttattgccgctggaactgaggatgtccaagttcgtctttgtgatattgcttcaggg
gcatttgctcacacattatctggtcaccgtgacggagtaatgactgcagaatggtctact
tcaaatgaatgggtcttagttactgggggatgtgatggtgctatacgattttgggacatc
agacgagctggctgtttcttagtgttgaatcagtcttcaacgcaactcggaaggcgccca
ccagtggttaaatgctccaagataactaaggattcaacatgcaagtccttggcgggacac
aatctgagtataaaatcacatgctggacaaaggaaactttctaatgggagtggtagcagg
cagttgtcaataggtaaagtttctgccaagggaccaatgaaacagagattacatccaggg
atgctgtctactcaagaccgtgcaactgctcattatggtgccgtgactgggttaaaagtt
actgaggatggcatgtatctcttaagtgcaggatctgattcaagattgaggttatgggat
gttgaatcgggatgcaacacactggtgaactttgaaacagtgcgcctacaaacaaacaaa
ccaattcaattagccaccactcgggattcaacccttgtttttgttccctgcatgagatct
gtgaaatctttcaacgtgtggtcagggtacacacatgcaacatttcgtggccactatgaa
tgtgtgaattcttgctggtttagcgaacaagatcaggagctatacactggtggaaatgat
aaacaaattcttgtctggtcaccacctagagtaattgctgatgaagcgaatgaattacca
atggaggaccgggataactggagcgactaa
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