Prosopis cineraria: 129302165
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Entry
129302165 CDS
T09047
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129302165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129302165
03012 Translation factors [BR:
pcin03012
]
129302165
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129302165
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129302165
Translation factors [BR:
pcin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129302165
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
R3H
Helicase_C
DEAD
HA2_C
HA2_N
OB_NTP_bind
Ank_2
AAA_19
AAA_22
nSTAND3
ResIII
ATPase
AAA_23
T2SSE
AAA_16
Rad17
AAA_7
Ank_5
Myosin_head
Motif
Other DBs
NCBI-GeneID:
129302165
NCBI-ProteinID:
XP_054796819
LinkDB
All DBs
Position
Unknown
AA seq
1173 aa
AA seq
DB search
MTKRRRPGNGQPLQSQNPKVDEPTRIRFSQILQEFQKSNEKEYKFDATLSKNERALVHQI
SQKMGMKSKSYGTAKQRRISVFKTVKKVDTVTGLEKLPCFAFSEGAQMVLGNLFAHHPPG
GGDLLEEMVGRRNDKTNKAKQNKDDIFSKPSMSKAEISKKLEAFSSRMKTAPHLQQITTQ
RSKLPITAFRDVISSTVESHQQVVLISGETGCGKTTQVPQYILDHMWGKGEVCKVVCTQP
RRISAISVAERIASERGETIGENIGYKIRLESRGGKHSSVMLCTTGILLRVLCSFSKCLS
RSKTGTMRNDKFEITHIIMDEVHERDRFSDFMMAVVRDMLPSYPHLRLVLMSATIDAERF
SQYFGGCPVILVPGFTHPVRTFYLEDVLSIVKYNEENHLDNATSNNLTDNHELSEEDKVS
LDEAIHLAWSNDDCDPLLELITSKGSPKIFNYQHSLTGLTPLMVFAGKGRVGDMCMLLSF
GADCHLRSKAGMGALEIAEQENNQEIAEILKKHIDSASSNSTEGQKLLDKYLTTVNPELV
DVVLIEQLIRKICVDSKDGGILVFLPGWDEINRTREKLLQSPFFNNSKFTIIPLHSMVPS
KEQKKVFLRPPLGCRKIVLSTNIAETAITIDDIVYVIDTGRMKEKSYDPYNNVQTLQSSW
VSKASAKQREGRAGRCQPGICYHLYSKYRAASLPDFQVPELRRMPIEELCLQVKMLDPTC
KVEEYLSKTLDPPVFESIRNAIIALQDIGALSIDEKLTELGEKLGSLPVHPLTSKLIFVA
ILMNCLDPALTLACASDYRNPFIIPMSTGDKRKAAAARSELASLYGGCGDQLALIAAFEC
WHNARTMGNESWFYSQYYVSPNVMYMLHGMRKQLQTELIRSGLIQEDVSRYNVNSHNPGI
IHAVLVAGLYPMVGKLIAPKGAKKVVVETANGYKVRLNQHSINYKLQSKVTVSRPLAVLD
EITRGDGGGMCTRNCTLVGPLPLLLLSAEIAVAPVEDNIDDPNDEEDDEGSESDGVSDDD
IDLDNKVSEHCENKSSEPGADKVMSSPDNSVRVIMDRWLYFESRALDVAQLYCLRERLSA
AILHKVSYPREPLPPTLEASINALVGILSSDGLLGMPDQLSCIVDTPASQEALLSSAKTQ
SNLKKSLPLSPCRPSNVNVENHAPNNQHVNSRK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagaggagacggcccgggaatggacagccacttcagagccagaatccaaaagtt
gatgagcccacgcggattcgatttagccagatattacaagagtttcagaaatccaatgag
aaagaatacaagtttgatgccactttatccaaaaatgaacgtgctttagtgcatcaaata
tcccaaaaaatgggtatgaaatcaaaaagttatgggacagcaaaacaacgtcgtatatct
gttttcaaaactgtaaaaaaggttgacaccgttacagggttagagaagcttccttgtttt
gcattttccgaaggggcacaaatggtattagggaatctatttgcccatcatccacctggt
ggtggagacttgctggaagagatggtaggaagacgtaatgacaaaactaataaagcaaaa
caaaataaagatgatattttcagcaagccttccatgagcaaagctgaaattagtaagaaa
ttggaagcattttcttctagaatgaagacagccccccacttacaacagatcacaacacag
aggtctaaacttccaattacagcattcagggatgtaatctcatcaactgttgaatctcac
cagcaggtagttctcatatctggtgagactggttgtggaaagaccacacaggtcccacaa
tatattttggatcatatgtggggcaagggtgaggtatgtaaagtagtttgcactcaacct
cgacgtatctctgcaatttcagttgctgagagaattgccagtgaaagaggtgagaccatt
ggagaaaatattggttacaagatacggttagaaagcagaggtggaaagcattcatcagtc
atgctatgtacaactggaattttgttgagggtcttgtgctcgttttctaaatgtttgagt
agatcaaagacaggaaccatgaggaatgacaaattcgagatcactcacataattatggat
gaagttcatgaaagggaccggttctcagacttcatgatggcagttgttagagacatgctc
ccttcatacccacaccttcgcctggtactaatgagtgctaccatcgatgctgaaagattt
tcccaatattttggtggctgccctgttatccttgttccagggtttactcatccggtcaga
actttctatctggaggatgtgctttcaattgtaaaatacaatgaagaaaatcatcttgat
aatgctacatcaaataatttgacagacaaccatgagttaagtgaggaagataaagtttca
cttgatgaagctattcatttggcttggtctaatgatgactgtgatccacttttggagctg
attacttctaaaggatccccaaagatctttaattaccagcattcattgactggccttacg
ccattaatggtgtttgctggaaaaggaagggtgggtgatatgtgtatgctgttatccttt
ggggcagactgccacttaagatccaaagctggaatgggagctctggagattgctgagcag
gaaaataatcaagaaatagctgaaattttgaagaaacacatagattctgcatcttcaaac
tccacggaagggcagaagctacttgataagtatcttacaacagtcaaccctgaacttgtt
gatgttgttctgatcgagcagctgatacgaaaaatatgtgtggactcaaaggatggagga
atccttgttttccttccaggttgggacgaaataaatagaactcgtgaaaaattgctccaa
tccccatttttcaataattcaaagtttaccattatacctctgcattcaatggttccatca
aaggagcaaaagaaggtttttttgcgcccaccgcttggttgccgcaaaattgttctttca
accaatattgctgagaccgccataaccattgatgatattgtctatgtcatagacactggg
cggatgaaagaaaaaagttatgatccttataataatgtccaaactcttcaatcatcttgg
gtttcaaaggcaagtgctaagcaacgagagggacgtgctggccgctgtcagcctggaatt
tgctatcatttgtattcaaagtatcgagcagcttccttgcctgattttcaggttcctgaa
ttaagaagaatgcctattgaagagctttgtctgcaggtgaagatgcttgatccaacctgt
aaggtagaagaatatttgtcaaagacactagatcctccagtttttgagtccatacgaaat
gccatcatagctcttcaagatattggggcattatctattgatgaaaagctcacggagtta
ggagagaagcttggttctcttcctgttcaccccttaacgagcaagttaattttcgtcgct
atattgatgaactgccttgatccagcattaactctagcatgtgcttctgattatagaaat
ccattcataattcccatgtcaactggggataagaggaaagctgccgctgccagatctgag
cttgcttctttgtatggggggtgtggtgatcaacttgctttaatagctgcatttgaatgt
tggcataatgcaaggacaatgggtaatgagtcgtggttttattctcaatactatgtgtcc
ccaaacgtaatgtacatgttacatggcatgcgcaaacaacttcaaactgaattgattcga
agtgggcttattcaagaagatgtttcaagatacaacgttaattcacacaaccctggtata
atccatgcagtattagttgcgggtctgtatccgatggttggaaaattgatagcacccaaa
ggtgcaaaaaaagttgttgtggagactgcaaatggttataaagttcggttaaatcaacac
tctataaattataagttgcaatcaaaggtaactgttagccgtcccttagctgtgttggat
gagattactcgaggtgatggtggtggtatgtgcacaagaaactgtacgcttgttggacca
cttcctctcttactgctttcagccgagattgctgttgctccagtagaggataatattgac
gatcccaatgatgaggaggatgacgaaggcagtgaatctgatggtgttagtgatgatgac
attgatcttgataacaaggtcagtgaacattgtgaaaataagtcctctgaacctggtgca
gataaggtgatgtcttctcctgataattcagttagagtcatcatggatcgatggctttat
tttgaatcaagggcactcgatgttgcgcagttatattgcttaagagagcgtttgtcagca
gcaatattgcacaaagtatcatatccaagggaaccccttcctcccaccttagaagcatct
ataaatgctctggtgggcattctgtctagtgatggtctcttgggcatgcctgatcagtta
tcatgcattgttgacacaccggcaagtcaggaggctctactgagttcagctaaaactcaa
tcaaacctaaagaagtctcttcctctttcgccatgtcgtccttcaaatgtgaatgtagag
aatcatgcaccaaataaccaacatgtaaactctcgtaagtga
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