Prosopis cineraria: 129302887
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Entry
129302887 CDS
T09047
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
pcin
Prosopis cineraria
Pathway
pcin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129302887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129302887
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129302887
mRNA cycle factors
Common to processing body (P body) and stress granule
129302887
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
129302887
NCBI-ProteinID:
XP_054797755
LinkDB
All DBs
Position
Unknown
AA seq
969 aa
AA seq
DB search
MMIVQMDKMSAPSSRERAQRLYEKNLELENKRRRSAQARVPSDPNAWQQMRENYEAIIIE
DHTFAEQHNIEYALWQLHYKRIEELRAYFSAALSSTSPNSTHGIKGPARPDRITKIRLQF
KTFLSEATGFYHDLIMKIRAKYGLPLGHFEDSENRIVMEKDGKKSAEMKKGLISCHRCLI
YLGDLARYKGLYGEGDSVNREFAAASSYYLQAASFSPSNGNPQHQLALLASYSGDELVTI
YRYFRSLAVESPFTTARENLIVAFEKNRQSYSQLPGDAKALVAKVSSGRLAGKGRGKVEA
KLAAKSVEASPKKEGASNIEERYKNFCTRFVRLNGILFTRTSLETFTEVLSLVSAGLREL
LSGGQNDELNFGTDTLENGLAIVRIVSILIFTVHNVNRESEGQTYAEIVQRAVLLQNAFT
ATFELMGYIVERCVQLHEPSSSYLLPGILIFMEWLASYPDFAAGNDADENQAMVRSKFWI
NCISFLNKLLSVGPVSIEDDEENTCFNNMSRYEEGETENRLALWEDFELRGFLPLLPAHT
ILDFSRKHSLGSESDKGRKARVKRIVSAGKALANVVRVNQNMIHFDSRGKKFVIGVEPQK
VDDVVIATYSGMPNAEELVQEIVLPNQHQYMEGDEDDEVIVFKPVVAEKPAEVVSSTWAA
HGELESVQKASEEDKKFHANTISNPLNNLNHQNAFDANFNMPVSVSGMMPQHLQTVQPHS
SRWLEEMSFANSLKGLTFLENGHVMKPDLQEASCTSNYGAFPVPTQHFSACTTALFHGLT
NAPESVIPSKVDAVATSGIVIDNMVVNPSTMQAGLSKAVSRPIRHLGPPPGFGALPSNQV
KTNVSDSVSGNLLLDDYSWLNGYQLPPSTKGLGSNGPLTYSHSNSQQVLNNNGLGGTVSF
PFPGKQVPPVPLDGEKQNIWQDYHTPEPSKIHHNQQLQPHQQFAAGNQQFTPLPEQFQGQ
STWTGRYFV
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgtacagatggataaaatgtctgctccttcatcacgggagcgtgcacaacgc
ctttatgagaagaaccttgaattggagaacaagcgccggaggtcggctcaagcacgggtt
ccatcagatccaaatgcttggcaacaaatgcgtgagaactacgaagctataattattgag
gaccatacatttgctgagcagcacaatattgagtatgccttgtggcagttgcattacaag
cggattgaagagttgagagcatatttcagtgctgctctttcttccacaagcccaaattcc
acacacgggatcaagggccctgcacgacctgataggataactaaaataaggctgcagttt
aagaccttcctttcagaagctactgggttttaccatgatcttattatgaaaataagagcg
aagtatggtcttccactgggccactttgaggattctgagaatcgaattgtaatggaaaag
gatggaaagaaatctgcagaaatgaagaaaggtttaatatcttgtcaccgttgtctgata
tatttgggtgaccttgctcgctacaaaggactgtatggtgaaggtgactctgtaaatcgt
gagtttgcagcagcttctagttactacttacaagctgcatctttttctccatcaaatggg
aatccccaacatcagcttgctctattggcttcatattctggggatgagctagtgactatt
tataggtatttccggagtctggctgtggagagcccatttacaacggcaagagagaatttg
attgttgcatttgagaagaatcgtcaaagttactcacagcttcctggtgatgccaaagct
cttgtagctaaggtatcttctgggagattagctggcaaaggaagaggaaaagtggaagct
aaactggcagcgaagagtgtagaagctagtcctaaaaaagagggagcatctaatatagag
gagagatacaaaaacttctgcactagatttgtccgtctaaatggaatattattcacacgt
acaagccttgagaccttcactgaggttctttctctggttagtgctggcctgcgggagctt
ctgtctggaggccaaaatgatgagctgaattttggcactgacactcttgaaaatggactt
gcaattgttagaattgtgtccattcttatttttacagttcataatgtgaatagggaatct
gaaggtcaaacttatgctgaaatagtacagcgtgctgttctacttcagaatgcatttact
gcaactttcgagctgatggggtacattgtagaaagatgtgtacagctgcatgaaccttct
tcaagttatcttctaccaggcatattgatttttatggagtggttggccagttatccagat
tttgctgctggcaatgatgcagatgagaaccaagcaatggtcagatcaaaattttggatt
aattgtatatccttcttgaacaagctactttcagttggaccagtatctattgaagatgat
gaggaaaatacttgctttaataacatgagcaggtatgaagaaggagaaactgaaaaccgg
cttgctttgtgggaggattttgagttaagaggattccttcctcttcttcctgcacatacc
atcctggatttttcaaggaagcactcccttggaagtgagagtgacaagggaagaaaagct
cgggtcaaaaggattgtatcagctggaaaggctttagcaaatgttgttagggttaatcag
aatatgattcattttgactcaagggggaagaaatttgtaattggtgtggagcctcaaaaa
gttgatgatgttgttattgctacatattcaggcatgcctaatgcagaagagctggttcaa
gaaattgtactgccaaatcaacatcagtacatggagggagatgaggatgatgaagttata
gtttttaaacctgtagtggctgagaaaccagctgaggtggttagttcaacatgggcagct
catggagagttggaatctgttcagaaagcttctgaggaggataaaaaatttcatgccaac
actatttcaaaccccttgaataatctaaaccatcaaaatgcttttgatgcaaattttaac
atgcctgtttctgttagtggaatgatgcctcaacacctacaaacagttcagccacattct
tcaaggtggttagaggagatgtctttcgcaaacagtttaaaaggtctcaccttcttggag
aatggtcatgtgatgaaacctgatcttcaggaagcttcatgcacctctaattatggagcc
tttcctgttcccacccaacattttagtgcttgtactactgctttgtttcatggtctcaca
aatgctccagaatctgtgataccatccaaagttgatgctgttgcaacttctggaattgtg
attgataatatggttgtgaatccatcaactatgcaagctggtttaagtaaagctgtcagt
cggcccattaggcaccttggacctcccccaggctttggtgcccttccttctaatcaagtt
aaaactaatgtttctgattcagtcagtgggaatctgttactggatgattacagttggttg
aatggatatcaattgcctccatcaaccaaaggtttgggctctaatggtccccttacttac
tcccattcaaattcccagcaagtccttaacaacaatggccttggggggacagtcagcttc
cccttccctggaaaacaagttccacctgtgccacttgatggggagaaacaaaatatttgg
caagattatcacactcctgaaccctcaaaaattcatcacaatcagcagttgcagccacat
caacagtttgctgctggaaatcaacaatttactccactgcctgagcaatttcaaggacag
tcgacctggacaggtcgttactttgtgtga
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