Prosopis cineraria: 129302954
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Entry
129302954 CDS
T09047
Name
(RefSeq) SNF2 domain-containing protein CLASSY 2-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pcin
Prosopis cineraria
Pathway
pcin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129302954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcin03400
]
129302954
DNA repair and recombination proteins [BR:
pcin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
129302954
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
129302954
NCBI-ProteinID:
XP_054797873
LinkDB
All DBs
Position
Unknown
AA seq
1638 aa
AA seq
DB search
MSHKKRNLYQSKRSLKSHPFEAFLSGSWKAVELIKIEGGTSTLHFINSQNRVLKKGPDSD
IRIRSRKATLSDCSCFLRPGIDVCVLSASQQDDNSGKICLEPGWVDARIRSVQRKPHESR
CSCEYFVNLYVNQGCYDLEMRSLNKESKVVGINQISILQKLDRNPCGDQHYRWESSEDCF
EARKTKLFAGKFLSDFAWLVVASALKQVSFCVRSVENKIVYQILGCERSSSSLNCNSLKQ
VNFRVDNGMLVPIVAHIVLSDDKKIDQAKDASEDEISPVSCTEGLRRSKRRNIEPERYLG
CDGVFKLDFGSVRTSLPKSNTSKDGVDLQANCLEEDIDACQNINKINTCQEVLVNKSGAA
SGKVKLDDVDKEGHKTQPVSDSLPDGGGPVAHDHSYLNTNNTGNSRHENCVFSKYNHLTH
CPKLNRKIVDPWTFEPYDHLPKVPDPENSAKEIDDKSSLCYSDTRNVQRKDLYGPEDMDT
ENRWEGMHSNKEIQGKNYHSPMRSKSCGEERTYKDRSLSDAENCAKEIDDKSPKCYFGTC
NVQMKDLSGLVDVDTENRSEGIHSDKEIQREKYQPPTTRSKSRGEERTCKDRSSSDAENC
AKEIDDKSSGCYYFGACNVQRKNLSCLEDMDTENRCEGTHSDKEIQEEKYQPPTTRSKSH
GGERTYKGRSASHAENSAKEIVDKSSRCYYFSASNLQRKDLSGRGYMDSENRWERHSEEI
QGEKYQPPTTRSQSRGGERTYKDRSSSHAENSAKGIGDKSSSCYYFSASNLQRKNLSSGE
DMDAENRWEGIQERTCKARSLSDAENCAKEVGDKSSRCYYFGTCNVHRKDLSGLEDMDTE
NRPDRIRSNKEIQEKKYYLPMTRSKSFTHSEERTYKDRSLSDAAYKELIDFYLKNTDMAP
TKEEPPIPDQWVEFKATSNYGQKWGAKPDGEVSEIDLLWREMEVALASNYIFDNIEDSKA
AVFSETEENSDKLCHHDFRLNEEIGIYCCKCGYVSTEIKDISPPFVQNLGWQQDEKQWNA
AKANEDDSLHLFSNHPSTDMPVSEENDIWGLIPELTSKLHVHQKKAFEFLWKNISGYVEP
ASVKAASKRIGGCVISHSPGAGKTFLIIAFLASYLKLFPGEKPLVLAPKTTLYTWYKEFI
KWEIPLPVYLIQSQRRAHGACKESLVIPGVPKPNGDVRHLLDSLEKIQKWHSHPSVLVMS
YTYFSRLMGENSKFSHRKYMAEVLRKSPGVLILDEGHNPRSTESRLRKALMKVETELRIL
LSGTLFQNNFCEYFNTLFLARPKFVHEVLRELDPKYKRKKGRAERKPNFIEARARKLFLD
KIAKKIDSGDSDERLQGLNMLRKITNGFIDVYEGGGSDSLPGLHVYTLLMNITDYQDQLF
HALYEKIADSNRYPLEVELLVTLGAIHPWLIKTAACSDKFLNEAQLRELEKCKFDLKIGP
KIRFVLGLVYRVVKEEKTLVFFHYIAPMRLFVELFEKFFGWQLGCEVLVLSGEQDLFERG
RVMDKFEEPRGASKVLLASITACSEGISLTAASRVILLDSEWNPSRTRQAIARAFRPGQQ
RIVYVYRLLVTGTMEEEKYRKTTWKEWVSRMIFSEDFVEDQSKWQAEKLEDDILQEMIAE
DKSKIFHVIMKDEKASTN
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacaaaaagaggaatttatatcaatcaaagcgttcattgaaatctcaccccttt
gaggcatttctctctggctcatggaaagctgtggagctcataaaaattgaggggggaact
tcaacactgcattttatcaatagccaaaatagagttttgaagaaaggtcctgattcagac
attcggataaggtcaaggaaagctactctatcagattgctcctgttttctaagacctgga
attgatgtatgtgtgctatcagcctctcaacaggatgataattcagggaaaatttgtctt
gaacctgggtgggttgatgctagaataagatctgtgcagagaaagccccacgaatctagg
tgttcatgtgaatattttgtcaacctctatgttaatcaaggttgttatgatctagagatg
agaagtcttaataaggagagtaaagtggttggaataaatcaaatatccatcctccagaag
cttgatcgcaatccctgtggagatcagcattatcggtgggaatcatctgaggattgcttt
gaagcacgaaagactaaattgtttgcaggaaaattcttatctgattttgcatggttggtt
gttgcatcagctttaaagcaggtctctttctgtgtaagatctgtagaaaacaagattgtt
tatcaaattttgggatgtgaacgttcaagctcttcattgaactgtaattctcttaaacag
gtaaatttcagagtagacaatgggatgttagtacccattgttgctcatatcgttctgtct
gacgacaaaaagatagaccaagcaaaagatgcatctgaagatgagatctcaccagtttct
tgcacagagggcttacggcgttccaaacgtcgtaacatagaacctgaacgttaccttggt
tgtgatggtgtctttaagttggattttggttctgttcgaaccagtttacccaagtccaac
acaagtaaagatggcgttgatttacaagcaaattgtctagaagaagatatagatgcttgt
caaaatatcaataagataaatacctgccaggaggtcctagtgaacaaaagtggggctgca
agtgggaaggtgaagttagatgatgttgacaaagaagggcataagactcaacctgttagt
gattctctgcctgatggaggtggtccagtagcacatgaccattcttatctcaacacaaac
aatactggaaattctaggcatgaaaattgtgttttttccaaatataatcatctgactcat
tgccctaaactgaacaggaaaattgttgacccatggacatttgaaccgtatgatcatcta
ccaaaagttcctgatcctgaaaattctgcaaaagaaattgatgataaatcttctctatgt
tattctgatacccgtaacgtgcagaggaaggatttatatggtccggaggacatggacact
gaaaatagatgggaagggatgcactccaataaagaaattcaaggaaaaaattatcattca
ccaatgagaagtaaaagttgtggggaagaaagaacttacaaagacagatccttaagtgat
gctgaaaattgtgcaaaagagattgatgataaatctcctaaatgttattttggtacctgt
aacgtgcagatgaaggatttatctggtctggtggacgtggatactgaaaatagaagtgaa
gggatacattccgataaagaaattcaacgggaaaaatatcagccaccaacaacaagaagt
aaaagtcgtggggaagaaagaacttgcaaagacagatcctcaagtgatgctgaaaattgt
gcaaaagagattgatgataaatcttctggatgttattattttggtgcctgtaatgtgcag
aggaagaatttatcttgtctggaggacatggatactgaaaatagatgtgaagggacacat
tctgataaagaaattcaagaggaaaaatatcagccaccaacaacaagaagtaaaagtcat
gggggagaaagaacttacaaaggcagatccgcaagtcatgctgaaaattctgcgaaagag
attgttgataaatcttctagatgttattacttcagtgccagtaatttgcagaggaaggat
ttatctggtcgggggtacatggattctgaaaatagatgggaaagacattctgaagaaatt
caaggggaaaaatatcagccaccaacaacaagaagtcaaagtcgtgggggagaaagaact
tacaaagacagatcctcaagtcatgctgaaaattctgccaaaggtattggtgataaatct
tccagttgttattactttagtgccagtaatttgcagaggaagaatttgtcgagtggggag
gacatggatgctgaaaatagatgggaagggatacaagaaagaacttgcaaagccagatcc
ttaagtgatgctgaaaattgtgcaaaagaggttggtgataaatcttctagatgttactat
tttggcacctgtaatgtgcacaggaaggatttatctggtctggaggacatggatacagaa
aatagaccggacaggatacgttccaataaagaaattcaagagaaaaaatattatttacca
atgacaaggagtaaaagttttactcacagtgaagaaagaacttacaaagacagatcttta
agtgatgctgcctacaaggaattgatagatttttacttaaagaatactgacatggcacca
actaaagaggagccacctatacctgaccagtgggtagaatttaaggcaacaagcaactat
ggacaaaagtggggggcaaaacctgatggagaagtttctgaaattgatttattgtggaga
gaaatggaagttgcattagcatcaaattacatctttgataacatagaggattcaaaggct
gcagtcttttctgaaactgaggaaaattctgacaaactttgtcatcacgattttagattg
aatgaagagattggaatttactgctgtaaatgtggctatgtgagcacagagataaaagac
atttcgccaccctttgtgcaaaacttgggatggcaacaagatgaaaagcagtggaatgct
gcaaaggccaacgaggatgatagtttacatcttttctcaaatcatccttcaactgatatg
cctgtatctgaagaaaatgatatctggggactgattcccgaacttactagtaagttacat
gtccaccagaaaaaagcttttgaatttctttggaaaaacatttctggatatgtggaacca
gcatctgtgaaagcagcatcaaaaagaataggtggctgcgtgatatctcattcacctgga
gctgggaaaacttttctaattattgcatttcttgcaagctacttgaagttgttcccagga
gagaaacctttggtccttgctccaaagacaacactttatacgtggtataaagaatttatc
aaatgggaaattcctttaccagtgtacctaattcaatctcaacgtagagcccatggagca
tgcaaggagtcattggttattcctggtgtgccaaagcccaatggagatgtcaggcatctt
ttggactctcttgaaaaaatacagaagtggcattcacacccgagtgttctagtcatgagt
tatacttacttttctaggctgatgggagagaattcaaagttttcgcaccgaaagtatatg
gctgaagttttgaggaaaagtccaggggtcctgattctggatgaagggcacaatcctaga
agtacagaatcacgtttgaggaaagccttaatgaaagtagagacagaattgagaatacta
ctttcaggtacattgtttcagaacaatttctgtgaatacttcaacactctcttcttggca
agaccaaagtttgttcatgaagtgctgagagaattagaccccaaatataagaggaaaaaa
gggagagctgaaagaaaaccgaacttcatagaagcacgggcaagaaaattattcttagat
aaaattgcaaaaaaaatagactctggtgatagtgatgagaggttgcagggtttaaacatg
ttaagaaagatcacaaatggatttatagatgtttatgaaggtggaggttctgatagtctt
cctggtttgcatgtttatacattgttaatgaatattactgattatcaagatcagcttttt
catgcactctatgaaaaaattgccgattccaatcggtatcccctggaggtggagcttttg
gtaacccttggagcaatacatccgtggctaattaaaacagctgcatgctctgataagttt
ttaaatgaggcgcaactgagggagctagaaaaatgcaagtttgatttgaagataggacca
aaaatacggtttgttctgggccttgtatatcgtgttgtcaaggaggaaaagactcttgtc
tttttccactacattgcacctatgagattgtttgtagaactattcgagaaattctttgga
tggcagttaggttgcgaagttttggtacttagtggggaacaagatctctttgaacgtgga
agagtcatggataagtttgaggagcctagaggagcatcaaaggtactccttgcttcaatt
acagcctgttctgaaggcattagtctgacagcagcttctcgtgtgattttgttggactca
gagtggaatccatcaagaacaaggcaagctattgcccgtgcctttcgtcctggtcagcaa
aggattgtatatgtgtatcggcttttggtgacgggtacaatggaggaagaaaaatatcgc
aaaaccacctggaaagagtgggtttcaagaatgatttttagtgaggattttgtggaggat
caatcaaaatggcaagcagaaaagcttgaagatgatatacttcaggaaatgattgccgaa
gacaagtctaaaatattccatgtgataatgaaagatgagaaagcttcaaccaactga
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integrated database retrieval system
