Prosopis cineraria: 129303238
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Entry
129303238 CDS
T09047
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129303238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129303238
Enzymes [BR:
pcin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129303238
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129303238
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
PHD_ash2p_like
Motif
Other DBs
NCBI-GeneID:
129303238
NCBI-ProteinID:
XP_054798379
LinkDB
All DBs
Position
Unknown
AA seq
693 aa
AA seq
DB search
MQNWRVTMKAQKIASWALARAFSSVSSASLPQSGSAFPLKTVTKSNFDASLAELRYHVQA
ADFVAIDLEMTGITSAPWRESFEFDSSDVRYLKVKDSANKFAVVQFGVCPFRWDSSKHAF
ISYPYNFYVFPRQELAGLGPCFEFLCQTTSIGFLAKYQFDFNACIHEGISYLSREQESEA
VRCLNTINDSDGFDEDSRFGMKNVKDIPSVSMSDILFTERVKNKFSEWRDGLFQDQDGED
KIQRFSEDSKQQLQVIFYKMLPALRLCGFTSHQLKLIKLVVRKHFKDIFYVSVNSEDSGL
QHMVVYTDSRDELKSLLKEVQDEHQREVEMKIQAAVGFRHVVDLLSSEQKLIVGHNCFLD
IAHVYSKFIGSLPSTVQDFVSSVNKYFPYIVDTKILLNGNYLLQKRMKKSPKSLASIFAF
LCQQIAVGFKSSDVVSLTAMKVEIEANDSRSSSWNPGGKHEAGYDAFMTGCVFAQLCSHL
GVDFKSNDSSQHLALNEKIRKYINLLYLNWLHGDIIDLSTGDRVGDFGIHDLKRQQRQKI
LFENVVLIWGLPFKLRTSEVRDCITKVYGPTSVVAVYRLDESAVFVQLSKTELVSDFLSL
KDKLEGPGSPLSVSHPFAKLLEGGNTCAASYDTYKEICGSPLSEILFADQAKAVGIKWKT
KLVEHKAALETEEKIEPTTLDQLGNAVEKCMFL
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgcagaactggcgagtgacgatgaaggctcagaaaattgccagctgggcactcgcacgt
gccttcagctctgtctcctctgcttcactacctcaatcgggatcggctttccctctgaaa
accgtcaccaaatcaaacttcgatgcctcactagctgaacttcgttaccatgtccaagcc
gcggacttcgtcgccattgaccttgaaatgacgggaatcaccagcgccccatggcgggag
tccttcgagttcgatagctccgatgttcgctacctcaaggttaaggattctgcgaataag
tttgccgtcgtacaattcggtgtctgtcccttccgctgggattcttcgaagcatgcgttt
atctcttatccgtacaatttttatgtttttccacgtcaggagcttgcaggtttgggtcct
tgttttgagtttctctgccagactacttccataggttttttggctaaataccagtttgat
tttaatgcatgcatacatgaaggaatatcttatttatccagagaacaagaaagtgaagct
gtaaggtgcttgaatacaattaatgatagtgacgggtttgatgaagattcaaggtttggc
atgaagaatgtcaaagacataccgtcagtcagtatgtcagatattttgttcactgaacga
gtgaaaaacaaattcagtgaatggcgtgatgggttatttcaggaccaagatggggaagac
aaaattcaaagattctcagaagattcaaaacagcaacttcaagtcattttctataagatg
cttccagctcttagactttgtggattcacctctcatcagcttaagttgattaagttggtt
gtcagaaagcatttcaaagatattttttatgtcagtgtaaacagcgaggattctggtttg
caacacatggttgtgtatacagactcaagggatgaactgaaatcacttctgaaagaagtg
caagatgagcatcaaagggaagtagagatgaagattcaagctgcggtaggattccgtcat
gttgttgacctcctttcctcagaacagaagctgatagtcggtcacaattgctttttggat
attgctcatgtatacagcaaatttataggttctcttccaagcactgttcaagactttgtc
tcctctgttaacaagtattttccatacattgttgacaccaaaatactcttgaatggcaat
tatttgctccaaaaaaggatgaaaaaatccccaaaatcactggcctctatatttgccttt
ttgtgtcaacaaattgctgttggattcaaaagcagtgacgtagtttctctgacagccatg
aaagtggagatcgaagcgaatgattcaaggtcatctagctggaaccctggaggcaagcat
gaagctggatatgatgctttcatgaccggatgcgtctttgcccagctgtgcagtcattta
ggtgttgattttaaatccaatgactcttcacaacatttagccctcaatgagaaaattcgg
aagtacatcaaccttctttatcttaattggttgcatggggacattattgatctaagtacc
ggtgatagagttggagattttgggattcatgacctcaagagacaacaacggcagaagatt
ttgtttgagaatgtagttcttatatggggacttcctttcaagctcaggacaagtgaagta
agagattgtataaccaaagtttatggtccaacttctgtagttgcagtctatcgcctggat
gaatctgcagtgtttgtccagctcagcaagactgaactagtctcggactttctttcattg
aaggacaaattagagggaccgggtagtccactttcggtttcacatccttttgcaaaactc
ttggaaggtggaaacacttgtgctgcttcttatgatacttacaaagagatttgtggttcc
ccactttcagaaattttgtttgctgatcaggcaaaggcggttggtataaagtggaagaca
aaattagtagaacacaaggctgccctggaaactgaagagaagattgagccaaccacactt
gaccagttaggaaatgctgttgagaagtgcatgtttttatag
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