KEGG   Prosopis cineraria: 129303423
Entry
129303423         CDS       T09047                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4 isoform X1
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
pcin  Prosopis cineraria
Pathway
pcin03022  Basal transcription factors
pcin03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pcin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    129303423
  09124 Replication and repair
   03420 Nucleotide excision repair
    129303423
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pcin03021]
    129303423
   03400 DNA repair and recombination proteins [BR:pcin03400]
    129303423
Transcription machinery [BR:pcin03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     129303423
DNA repair and recombination proteins [BR:pcin03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     129303423
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 129303423
NCBI-ProteinID: XP_054798689
LinkDB
Position
Unknown
AA seq 292 aa
MTSAPSKLYADDVSLLVVSLDTNPFFWSTFSLPFSEFISHVLAFLNSILLLGQLNQIVVI
ATGCNSCGYIYDSSSNNNHSSETVGMPALYSNLLQKLEEFVVKDEQLGRAQTPGAIASSL
LSGSLSMALCYIQRIFRSGPLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC
YIGSNNSAFLQQASYITGGIYHRPPQLDGLFQYLSMVFATDLHSRAFLRLPKSVGVDFRA
SCFCHKQTIDMGYVCSVCLSIFCEHHQKCSTCGSVFGQSQSAAKRQREASDA
NT seq 879 nt   +upstreamnt  +downstreamnt
atgacttcagctccttcaaagctctatgcagatgatgttagccttctggtggtctcattg
gatacaaatcccttcttttggagcacattttccctcccattttccgagtttatttcacat
gtacttgcgtttttgaattcaatcttacttcttggtcaacttaaccaaatagttgttatt
gccaccggatgcaactcatgtggctacatatatgattcttcttctaacaataaccacagt
tcagaaactgtaggaatgcctgcactttattctaatttgttgcagaaattggaggaattt
gtcgtgaaggatgagcaattgggccgggcccaaacaccaggggccattgcatcttcactg
ctatctggatcgttgtctatggccctttgttatatacagagaatttttcgctcaggacca
ctgcatcctcaacctcggattttatgtttgcaaggatctccagatggaccagaacagtat
gtggcaatcatgaatgcaatattctctgcacagcgttctatggttcccatagattcttgt
tatataggatctaacaattcggcattcctccagcaggcttcatacataactggtggcata
tatcaccggcctccccaattggatggtctttttcaatatctttcaatggtgtttgcaact
gatttacattcccgtgcatttctacgtcttcctaaatctgttggtgtggattttcgtgcc
tcgtgcttctgccataagcaaacaattgatatgggttatgtatgctctgtatgcttatcc
atattctgtgagcatcatcagaagtgttcaacctgtggcagtgtatttggtcagtctcaa
tcagcagccaagcggcaaagagaagcttctgatgcatga

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