Prosopis cineraria: 129304208
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Entry
129304208 CDS
T09047
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
pcin
Prosopis cineraria
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcin03021
]
129304208
03036 Chromosome and associated proteins [BR:
pcin03036
]
129304208
Transcription machinery [BR:
pcin03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
129304208
Chromosome and associated proteins [BR:
pcin03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
129304208
SLIK complex
129304208
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_CHD1_Hrp3
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
Chromo_MIT1
CHDCT2
SWI2_SNF2
OAM_alpha
Motif
Other DBs
NCBI-GeneID:
129304208
NCBI-ProteinID:
XP_054799872
LinkDB
All DBs
Position
Unknown
AA seq
1754 aa
AA seq
DB search
MAFFRNFSNETVSHSVLEEKGQGQNADRIRKSVGNECADASSSEKEFDMNMDAQYHSDGE
PDGRLQNEATADEVGDIQSTGSKTAMVGRWGSTFWKDCQPMSHQNGQEYGQESQSGSDYR
NAEGAEDNSSDGRGERLDSEDDDGQKEAGKGPRGHSDVPAEEMLSDEYYEQEEHSDSLHY
RGIHQPTGSNSWPQQMSNTVNSRANRNSRISDVVEDDEGDGDNDNDDGDADYEEEDEADE
DDPDDVDFEPATSGRSANKDRDWEGEESDEDDDIIDNVDVSDDDDTYYAKKPSGRQRGKV
GRTVKPTRERKSFAAPARQRKPKTSFEEDESTAEDSESESDDFKSMRKRGANARKNNVRS
SAAASFSGRNSEVRTSSRTVRKKVSYVESEESEEADEGKKKKSQKEELEEEDGDSIEKVL
WHQPKGMADEAQRNNRSTEPVLWSNLFDSEPDWNEMEFLIKWKGQSHLHCQWKSFAELQN
LSGFKKVLNYTKKVTEDIRYRNTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKD
NSGNVIIEYLVKWQGLSYAEVTWEKDIDIAFAQHAIDEYKAREAAMSVQGKMVDLQRKKS
KASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGF
LQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGNRAGREVCQQNEFYNDKKV
GRLIKFNALLTTYEVVLKDKAVLSKIKWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLL
ITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRR
VIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKK
CCNHPFLFESADHGYGGDSGSSDSSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQM
VRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINL
ATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLD
HLVIQKLNAEGRLEKKEAKKGGGLFDKNELSAILRFGAEELFKEERNDEESKTRLLSLDI
DEILERAEKVEEKEAEGEQGHELLSAFKVANFCNDEDDGSFWSRWIKPDAIAQAEEALAP
RAARNIKSYAEANQSERSSKRKKKEPEPSERVQKRRKADYSAPATPMIEGASAQVRSWSY
GNVSKRDALRFYRAVMKFGNESQIHLIAAEVSGPFAAAPPEAQIEIFNSLIDGCKEAVEL
GSMDPKGPLLDFFGVPVKANDLLNRVQELQLLAKRISRYEDPVAQFRVLTYLKPSNWSKG
CGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLMKKIAPVELHHHETFLPRAPNLRDRA
NALLEQELVVLGGKNANSKGGRKASKKEREHLMTISVARGPEKRKLSSSKVNVQMRKDRS
LRPQRIEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMIDEMKTLKRLHRLQTTSANLP
KEKVLSKIRNYLQLLGLRIDQIVLEHEEEPYKQDRMTTRLWNYVSTFSHLSGERLHQIYS
KLKQEQQDEAGAGPSHINGSVSGPFGRNHPSSFSRHVERQRGYKNVTSYQMPEPIHSTGK
SEAWKRRRRGEGDGHFQGQPPSQRAMGNGIQTSDPNSLGILGAGPSDRRLVSEKPYRTRP
GGAPPRQGFSSSIK
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
atggctttcttcaggaacttttcaaatgaaacagtttcacatagtgtcctggaagaaaaa
ggccaaggacaaaatgctgatagaatccgcaaatcagttggcaacgaatgtgctgatgca
tcttcaagtgagaaagagttcgatatgaacatggatgctcagtatcatagtgatggtgaa
ccagatggtagactgcaaaatgaggctacagctgatgaagttggtgacatccagtctact
ggaagtaaaactgctatggttggaaggtggggttcaactttttggaaggactgccagcct
atgagccatcagaatgggcaggaatatgggcaagaatcacaaagtggatcagactataga
aatgcagaaggggctgaagataattcatcagatggaagaggggaaagattagattcagaa
gatgatgatggacagaaagaagcaggaaaaggtccaagaggccattctgatgtgcctgct
gaggagatgttgtctgatgaatattatgagcaggaagagcacagtgattcattgcattac
agggggattcatcaaccgactggatcaaattcgtggcctcaacagatgtctaatactgtc
aatagtcgtgcaaataggaattctaggatttcagatgttgtggaagatgatgaaggtgat
ggtgataatgataatgatgacggtgatgctgattatgaagaggaggatgaagcagatgaa
gatgatcctgatgatgtggactttgagcctgccacaagtggtcgttctgcaaacaaggat
agagattgggagggtgaagaatcagatgaagatgatgatattattgataatgtagatgtt
tcagatgacgatgatacctactatgcaaaaaaaccttcggggaggcaacgtggtaaagtg
ggacgaactgtaaaacctactagagaacgcaaatcatttgctgcacctgctcggcaaaga
aaacctaaaacatcttttgaagaggatgaatcaacagcagaggattctgagagtgaaagt
gatgatttcaaaagcatgagaaagagaggtgctaatgctcgcaagaataatgttcgttct
tctgcggctgcaagtttttctggccggaacagtgaggttcgcacatctagcaggacagtt
aggaagaaggtgtcatatgttgaaagtgaagaaagtgaagaagcagatgaaggaaagaag
aagaagtcccaaaaagaagaacttgaagaggaagatggtgactccattgaaaaggtgctt
tggcatcagcctaagggcatggctgatgaggcgcagaggaataatagatcaacagaacct
gttttatggagtaatttgtttgattctgaacctgattggaatgagatggaattcttaata
aaatggaaaggccagtcacatttgcactgtcaatggaagtcatttgctgaacttcaaaat
ctcagtggttttaagaaggttttaaattatacgaagaaagtgacagaggacattaggtac
aggaacacaatttcaagagaggagattgaggtcaatgatgtgagtaaggagatggattta
gatattatcaagcaaaatagtcaggtggaaagaatcattgcagatcgaatcagcaaagat
aattctggcaatgttattatagaatatttggtcaagtggcaagggctatcttatgctgaa
gtgacatgggagaaggacatagatattgcttttgctcaacatgctattgatgagtacaag
gctcgtgaggctgcaatgtctgttcaaggaaagatggtagatctacaacgcaagaagagt
aaagcaagtttgaggaagcttgatgaacagcctgagtggttgaagggggggaagcttcgt
gattatcaacttgagggtttgaattttcttgttaacagttggagaaacgacacaaatgtt
attttagctgatgaaatgggtcttggtaaaactgttcagtcagtatcaatgcttggtttt
cttcagaatgcccagcaaatccatggtccctttcttgtagttgtccctttgtctactttg
tcaaactgggctaaagaattcaggaagtggcttcctgatatgaatattattgtatatgtt
ggtaatcgagcagggcgagaggtttgtcaacagaatgaattttataatgataaaaaggtt
ggcaggcttataaaatttaatgccctcttgactacatacgaagtggttctgaaggataaa
gctgttctctccaagattaaatggagttatctgatggttgatgaggctcatagactgaaa
aatagcgaggctcagctgtacactacactttcagagtttagcaccaaaaacaaattgctt
atcactggtactccactacagaacagtgttgaagagctatgggctttgcttcatttcctt
gatcctgataagttcaagagcaaggatgattttgttcaaaactataagaatctgagttcc
ttcaatgagaatgagcttgccaatcttcacatggaattgaggcctcacatactccgaaga
gttatcaaagatgtagagaaatcattgcccccaaaaattgagcgtatacttagagttgaa
atgtctcctcttcagaaacagtattacaagtggattttggaacgtaactttcatgatttg
aacaaaggagttcgtgggaatcaggtttctctgcttaatattgtggttgaattaaagaag
tgctgcaaccatcccttcctgtttgaaagtgctgaccatggttatgggggggactcagga
agtagtgatagcagtaagcttgagagaattgtcttcagcagtgggaagcttgtcatactt
gataagctacttgttagattacatgagactaagcatcgtgttctgattttctctcagatg
gttaggatgctggatatactggctgagtatatgtcacttagaggatttcaattccagagg
cttgatggcagtacaaaggctgagttacgacagcaggcaatggatcattttaatgcacct
ggtagtgatgacttttgcttccttctttcaactagagcaggaggtctgggtatcaatctt
gccacagcagacactgtcataatatttgattcagactggaatcctcaaaatgacctccag
gccatgagtagagctcatagaattgggcaacaagaagttgttaacatatatagatttgtg
acaagcaaaagtgtcgaggaagatattttggaacgagctaagaaaaagatggtcctcgac
catctggtcattcaaaaattaaatgcagagggtagactggagaagaaagaagctaaaaaa
ggaggaggtctttttgacaaaaatgagctgtcagcaattttaagatttggagcagaggag
ctttttaaggaagaaagaaatgatgaagagagtaagacgcggcttttaagtttggatata
gatgagattcttgaaagagcagagaaggttgaagagaaggaagctgagggagagcaaggg
catgagttattgagtgcctttaaggttgctaatttctgcaatgatgaagatgatgggagt
ttctggagtcgttggataaaacctgatgccatagcccaagctgaagaagctttggcccca
cgtgctgcaaggaacattaaaagctatgcagaggccaatcaatctgaaagaagtagtaaa
cgaaaaaagaaagaaccagagccttctgagagagttcagaaacgccggaaagcagactat
tcagctcctgcaacaccaatgattgagggagcatcagcccaagtgagaagttggtcatat
gggaatgtatctaaaagagatgcattacgattttatcgtgcagttatgaaatttgggaat
gagagccaaatccacttaatagctgctgaggttagtgggccatttgcagctgctccgcct
gaagctcagattgaaattttcaattctttaattgatggctgtaaagaagcagtggaacta
ggaagtatggacccaaaggggcctcttttggatttttttggtgtcccagtgaaggcaaat
gatctgcttaatcgtgttcaagaactccaactgttagcaaagcgcattagtagatatgaa
gatcctgttgcacagtttcgtgttttaacataccttaaaccttcaaactggtctaaaggt
tgtggatggaatcaaattgatgatgcaagattgcttcttggaattcattaccatggattt
ggtaattgggaaaagatacgattagatgaaaggcttggcctcatgaagaagattgcacca
gttgaacttcatcaccatgaaactttcttgccacgtgctcccaatttgagagatcgtgct
aatgcccttttggaacaagagcttgttgttctgggtggtaaaaatgccaatagtaaagga
ggtcgcaaggcttccaagaaggagagggaacatcttatgaccatttcggtggcacgtggg
ccagagaagagaaaattaagttcttctaaagttaatgtccaaatgagaaaggatagatcc
ctgaggccccagaggattgaaccaatagtaaaagaagagggtgaaatgtctgacaatgac
gaagtgtatgagcagttcaaggaggtaaaatggatggaatggtgtcaggatgtgatgatt
gatgaaatgaaaaccttgaaacgtcttcacaggttgcagacaaccagtgccaatcttcca
aaggaaaaggtgctttccaaaatccgcaattacttacagcttcttgggctgaggatagat
caaattgtgttagagcatgaagaggaaccttataagcaagataggatgacgacgcgattg
tggaactatgtctctaccttctcccatctttcaggggagaggctgcatcagatctattcc
aagcttaaacaggagcaacaagatgaagctggggctggcccctctcacatcaatggatcg
gtctctggtccatttgggagaaaccaccctagttcattctctcgccatgtggagagacaa
agaggatacaaaaatgtgacttcctatcaaatgccagaaccaattcacagtacaggaaaa
tctgaggcttggaagcggaggaggagaggagaaggtgatggtcatttccaagggcagcca
ccatctcagagagctatgggtaacggaatccaaacatctgaccctaactcactggggatt
cttggggctggaccatcagatagacgtctcgtcagcgagaaaccttatcggacacgacct
ggcggggctcctccgagacagggtttctcttccagcataaaatag
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integrated database retrieval system
