Prosopis cineraria: 129305054
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Entry
129305054 CDS
T09047
Name
(RefSeq) pre-mRNA-splicing factor RSE1-like isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129305054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcin03021
]
129305054
03041 Spliceosome [BR:
pcin03041
]
129305054
03036 Chromosome and associated proteins [BR:
pcin03036
]
129305054
Transcription machinery [BR:
pcin03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
129305054
Spliceosome [BR:
pcin03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
129305054
Complex B
129305054
Complex C
U2 SnRNP specific factors
129305054
Chromosome and associated proteins [BR:
pcin03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
129305054
TFTC complex
129305054
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
129305054
NCBI-ProteinID:
XP_054800937
LinkDB
All DBs
Position
Unknown
AA seq
1360 aa
AA seq
DB search
MAVSEEECSSAKCGPSSSSSSTAYYLAKCALRASVVLQVLYGHIRSPSYKDVVFGKETSM
ELVMIGKDGIVQSVCDQPVFGTIKDLAMLPWNGNFGARDPKLWGKDLLVVISDSGKLTLL
TFCNEMHRFYAVTHVQLSDVGNTRYLPGRMLAVDPSGFFFAVSAYEDRVALFSMSKCRSS
DIIDERITFPSESEGKESNRTPGIEGTIWSICFISQDSEKPSKENTPVLAILLNRKGEFL
NKVVLLEWNIKAQAVHVVSEFVEDGPLAHDIVDVPNCPGLAFLFRAGDALLMNLTDARYP
CLVCRTSFTFSPNAVEELTFVEDSCKLQDIDDESFNAAAYALLELSRYDPMCIDNDNGVP
YSGCKYVCSWSWEPENSVVSKMIFCLDSGEFFMIEIHFDSKGPQVIVSECLYKGLACKVL
LWVEEGYLAAFVEMGDGMVLKLEDGRLCYTSPIKNIAPILDMAVVDRHGEMHDKIFACCG
VAPEGSLRIIQSGINVERLLKTAPIYQGVTGAWAVQMKAIDSYHSFLVLSFVEETRILSV
GLSFTDVTDSVGFDPNVCTLACGLVSDGLLGQIHQCAVRLCLPTKAAHSEGTHLPSPICT
FWSPSNANINLGAVGHNFIVVSTSNPSFLLILGVRCQSTYHYEIYEMQRLELQNELSCIS
IPRKEFKHKQSDLSMPANCKFAASFSSGFDINKSFVIGTHRPSVEILSFTSDRGVRFIAC
GTISFMSTMGTAMSGCIPQDVRLVCVDRFYVLAGLRNGMLLRFEWPSDQPISPPVDVDTA
LSNMNFINSEENVSYKADNLPAPLQLIAIRHIGITPVFLVPLRDTLDADIIVLSDRRWLL
HSARHSLSYTSIGFEPSTHVTPVSSVECPKGILFVAENSLHLVEMVDNFNVQKFHLEGTL
RKILYHSESRMVIVLRTELNCDTCSSDICCVDPISGSVLSSFKLELGEIGKSMEFVRVGG
DRVLVVGTSLSLGPAMMPSGEAESANGRLLVLCLEHGKNSDSGSMMICSKAGSLSPRTSP
FQEIVGYVPEQLSRSSLGSSSDDNGSNGIKLDENDVWQLQLAYATKWQGMVLAICPYLDR
YFLASAGNAFYVCGFPNDNPQRVRKFAVGRTRYMITSLTAHFTRIAVGDCRDGILFYSYH
EEARKLEQLYCDPYQRLVADCILMDGETAVVSDRKGNISVLCSKHLEDNASPECNLKLSS
AYYMAEVAMSMQKGSYAYRLPAYDVLQSGDGPKTCGDSFQNTIIASTLLGSIMIFIRISR
EEYELLEAVQARLVVHPLAAPILGNDHNEFRSRENPVGTPKILDGDMLTQFLELTRMQQQ
AILSSEPPDVIKSSLKPIPPSHFQLNQVVQLLERVHYALS
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcggaggaagagtgttcgtctgccaagtgcgggccgtcatcgtcttcctcc
agcacagcctactaccttgccaagtgcgctctaagagcaagcgtcgttcttcaggttctt
tatggccacatccgttcaccctcctacaaggacgttgtcttcggcaaggagacgtctatg
gagttggtaatgattggcaaggatgggattgtgcaatccgtttgtgaccagcctgttttt
ggcacgattaaagatcttgccatgttaccctggaatgggaattttggtgcacgagatcca
aagttgtggggtaaagaccttttggttgttatatctgattctgggaagctgacattgctt
acattttgcaacgaaatgcacaggttttatgctgtaacgcatgttcagctatctgatgtg
ggaaacacaaggtatcttccaggaagaatgctagctgttgatcccagtggtttttttttt
gctgtaagtgcatatgaagatcgggtagctctgttttcaatgtcaaagtgcagaagcagt
gatatcattgatgagagaataacattcccttctgaaagtgaagggaaggaaagtaataga
acacctggcatagaaggtactatatggagcatatgctttatttcacaggattctgagaaa
ccaagtaaggagaatactcctgtacttgctattcttctaaataggaagggggaattccta
aataaggtagttttattggaatggaatattaaagcacaagcggttcatgttgtttctgag
tttgttgaagatgggcctcttgcacatgacattgttgatgttcccaattgcccaggactt
gcatttctattcagggctggtgatgctctcttaatgaatctgacagatgctcgctaccca
tgccttgtttgcagaactagctttactttttcacctaatgctgtggaagagctgactttt
gttgaagactcgtgtaagttacaagacattgatgatgaaagctttaatgccgccgcctat
gctttgttggagctgagccgttatgatcccatgtgtatagataatgacaatggtgttcct
tattcaggttgcaagtatgtttgctcatggagttgggagcctgaaaatagtgtagtttct
aagatgatcttttgcttagatagtggagagtttttcatgattgagattcattttgattct
aagggtcctcaggtcattgtctcagaatgtctatataaaggtctagcttgtaaagtgctt
ttatgggttgaggaaggatatctggctgcatttgtagaaatgggggatggcatggtccta
aaattggaagatggaaggctatgctatactagtcctataaaaaacattgcaccaatattg
gatatggcagttgtggatcgtcatggtgagatgcatgataaaatctttgcttgttgtggt
gtggctcctgagggttcactaaggattattcaaagtggtataaatgtggaacggcttctg
aagactgctcccatatatcaaggggtaactggtgcttgggcagttcaaatgaaagctatt
gattcatatcattcttttcttgtactatcatttgttgaagagactagaatattgtcggtt
ggattaagctttactgacgtgactgattcagttggttttgaccctaatgtctgtactttg
gcttgtggccttgtgagtgatggtttgcttggtcagattcaccaatgtgcagttaggctg
tgtctgcctactaaggctgcacactccgaaggtacccatttgccctctcctatttgcaca
ttttggtccccaagcaatgcaaatatcaatttaggggctgttgggcataattttatagtt
gtatcaacctctaatccatcttttttgttgatccttggagtgagatgtcaatcaacttat
cattatgaaatctatgaaatgcaaaggttggagttgcaaaatgaattatcatgcatttcc
attcctagaaaagaatttaagcataaacaatcagatttgtctatgccagcaaattgcaaa
ttcgctgcttccttttcaagtggattcgacatcaataaatcctttgttattggcacacat
aggccgtcagtggaaattttgtcttttacatctgatagaggagttagatttatagcttgt
gggacaatttcatttatgagcactatgggaacagctatgagtggttgtatacctcaagat
gtccggcttgtatgcgttgataggttttatgttcttgctggattaagaaatggaatgctt
cttcgctttgagtggccatcagaccaacctatttcaccaccagtggatgtggatactgct
ttatctaatatgaatttcataaattctgaggaaaatgtctcttacaaggcagacaaccta
cctgcccctctccaattgattgctatccgtcacattggcattactcctgttttcttggtg
cctctgcgtgacacacttgatgctgatataattgtgctaagtgataggcgatggttgttg
catagtgcaagacatagtctttcttacacttctatcggatttgagccctctactcatgtg
actcctgtttcttctgtcgagtgtccaaaaggaattttatttgttgctgaaaacagttta
catttggtggagatggttgataatttcaatgttcagaagtttcatttggagggcactctg
cggaagatcttatatcacagtgaaagcaggatggtgattgtgttaagaactgaattgaat
tgtgatacttgctcatctgacatatgctgcgtggatcccataagtggttcagtactttca
tcctttaaacttgaacttggagaaataggaaaatccatggaatttgtgagggttggaggt
gatcgggtgctggtagttggaactagcctttcccttggtcctgccatgatgccaagtggt
gaagctgagagtgccaatggccgtcttcttgttctatgccttgaacatggaaaaaattca
gatagtggttcaatgatgatatgttccaaggcagggtcattatctccaagaacttcaccc
ttccaggaaattgttggatatgtccctgaacagctgtcaagaagtagtcttggaagtagc
tctgatgataatggctctaacggcattaaacttgatgaaaatgatgtgtggcaattgcaa
ttggcttatgcaaccaagtggcaaggaatggtccttgcaatctgtccctatcttgatcgc
tacttcttggcttctgctggcaatgctttctatgtttgtggttttcccaatgataatcct
cagagagttagaaaatttgctgttggaaggacgcgttatatgataacatctttgactgcc
cattttactagaatcgccgttggtgactgtcgtgatggtatccttttctattcttaccat
gaggaagcaagaaaattggagcaactttattgtgatccatatcagcggttagtagctgac
tgcattctcatggatggtgagactgctgttgtttcagatcgtaaaggaaacatttctgtt
ttatgttctaaacatttggaagacaatgccagtccggaatgcaacttgaaactaagctct
gcttattatatggctgaggtagccatgagcatgcagaagggctcatatgcttacagactt
ccagcttatgacgttttgcaaagtggtgatggccctaagacgtgtggtgattcatttcaa
aatacaataattgccagcactcttttaggaagcataatgatattcatccgtatatcaagg
gaagaatacgagctcttagaagctgtgcaagctagacttgttgtccatccattggctgca
cctattctaggaaatgatcataacgagtttcgaagccgggaaaatccagttggaacgcca
aagatacttgatggggatatgctgactcagtttttggagctaacaagaatgcagcaacag
gccatactatcttcagaaccaccagatgtgataaaatcaagtctcaagccaatcccacct
tcacattttcagctaaaccaagtggtccaacttcttgagcgagttcattatgcactcagc
taa
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integrated database retrieval system
