Prosopis cineraria: 129305287
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Entry
129305287 CDS
T09047
Name
(RefSeq) uncharacterized protein LOC129305287
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129305287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129305287
03041 Spliceosome [BR:
pcin03041
]
129305287
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129305287
Spliceosome [BR:
pcin03041
]
Complex B
Other components
Prp19-related factors
129305287
Complex C
129305287
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
ARM_TT21
UTP6_C
Motif
Other DBs
NCBI-GeneID:
129305287
NCBI-ProteinID:
XP_054801286
LinkDB
All DBs
Position
Unknown
AA seq
892 aa
AA seq
DB search
MSISQELYPSQDDLLYEEELLRNPFSLKLWWRYLVARSEAPFKKRFVIYERALKALPGSY
KIWHAYLRERLDLVRNLPITHSQYDTLNNTFERALVTMHKMPRIWIMYLQTLTEQKLITR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPTHIEDFIEFL
INSSLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTRHANEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRGLHEKARDIFEEGMSTVVTVRDFSVIFDSYSQFEESML
SYTMEELGLSDEEEDNDQENGFGDEEDVRFLGRLSLEDFEKKILHGFWLSDKNDIDLRLA
RLEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTRQILTYTEAVRTVDPMKAVG
KPHTLWVAFAKLYEDHKDLANARVIFDKAVQVNYKSVIHLASVWCEWAEMELRHKNFKGA
LELMRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER
ILDLRIATPQIIINYAYFLEEHKYFEDAFKVYERGVKIFKYPHVKDIWITYLSKFVKRYG
KTKLERARELFENAVETAPADQVKPLYMQYAKLEEDYGLAKRAMKVYEQATKAVPNNEKL
SMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDRARGVY
IFASQFADPRSDSEFWNKWHEFEVKHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQK
DQTVSLDEAKETLKQAGVPEDQMASLEKKVGFVSAGVESQTDGGIKANANNEDIDLPEGS
DSEDDEKIEIAQKDVPSAVFGGLVRKREEGSEKNEDVTRLGALERIKRQKAS
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgtctatttcccaagaactttacccatctcaggatgacctcctctatgaagaagagctc
ttgcggaacccttttagccttaagttatggtggcgttatcttgttgctcgatcagaagct
ccatttaaaaaacgcttcgttatctacgagcgagctctcaaggccctccccggaagctac
aagatttggcacgcgtaccttcgtgaacgacttgaccttgttcgaaacctgcccatcact
cactctcagtatgacaccctgaacaacacgttcgagcgtgcccttgtcacaatgcacaaa
atgcccaggatctggattatgtatcttcaaactctgactgaacagaaactgatcactcgg
acacggagaacgtttgatagggccctttgtgcgctgccagtaacccagcatgatcgaatt
tgggagccatatcttgtgttcgtgagccaaaagggaatccctatcgagacttctcttcgg
gtttataggaggtacttaaaatatgatcctactcatattgaggattttattgaattcttg
attaattctagtctctggcaagaggctgcagagaggttggcttcggtgttaaatgatgac
cagttttattcaataaagggaaaaacaaagcacaggctatggttggagttgtgtgatttg
ctcaccagacatgccaatgaggtctctgggttaaatgttgatgcaataattagaggtggg
attcggaagtttacagatgaagtggggagactctggacatcgctggcagagtattatata
aggaggggtttgcatgagaaggctagggatatttttgaggaggggatgtcaactgttgtc
acagtgagggattttagtgtgattttcgattcatactctcagtttgaggagagcatgctt
tcttatacgatggaagagctgggtttaagtgatgaagaagaagataatgatcaagaaaat
ggctttggagatgaagaagatgttcgattccttggaagactgtctctagaggactttgag
aagaagattctgcatggattttggttgagtgataaaaatgacatagatttgagattggct
agattggaacatcttatggaccggagaccagaattggctaacagtgttcttttacgtcaa
aatcctcataatgtagaacagtggcaccgtagggtgaagctgtttgagggcaatcctact
agacagatattgacctacactgaagccgttaggacagtcgatcctatgaaagcagtggga
aaacctcacacattgtgggttgcttttgcaaaactatatgaagatcacaaagatcttgcc
aatgccagagttatatttgacaaggcagtacaagtcaattacaagtctgtgattcatctg
gctagtgtctggtgtgagtgggcagaaatggaattgaggcataagaatttcaaaggagcc
cttgagctcatgaggcgggccacagcagagccatcagttgaggtcaagcgaagagtggct
gctgatggaaatgaaccagttcaaatgaagttgcataaatccttgagattgtggacattt
tatgttgacttggaggaaagtctgggtaacttggagtctactcgtgcagtatatgagcgc
atattggatttgagaatcgcaactccacaaattataattaactatgcatatttcttagag
gagcacaagtactttgaagatgcatttaaggtttatgaaagaggcgtgaagatattcaaa
tacccgcatgttaaagatatatggatcacatatctctcgaaattcgtgaagagatatggg
aaaacaaaattggagagagcaagagagctgtttgagaatgctgttgaaacagctcctgct
gatcaagtaaagcctttatacatgcaatatgcaaagttagaggaggactacggactggca
aaacgagctatgaaggtttatgaacaagcaacgaaggctgttcctaataatgagaagtta
agcatgtatgaaatatatattgctcgtgctgctgagatatttggtgtacccaaaacaagg
gaaatctatgagcaggcaattgagtctggtcttccagacaaggatgtcaaaaccatgtgt
ttgaagtatgctgagttggagaaaagcttgggagaaattgatcgggcccgtggagtatac
atctttgcctcacagtttgcagatccacgatcagactctgaattttggaacaagtggcat
gagtttgaggtgaaacatggtaacgaagacaccttcagagaaatgcttcgtattaagcgc
agtgtctctgcgagctacagccagacccattttatactgcctgagtacctgatgcaaaag
gaccaaactgtgtctctggatgaggccaaagaaacattgaaacaggctggtgtacctgag
gaccaaatggcctcgctagaaaagaaagttgggtttgtcagtgctggagtagagtcacag
accgatggaggaattaaagctaatgcaaataatgaggatattgacttaccagaagggagt
gactctgaagatgatgaaaaaattgaaattgctcaaaaggatgtcccatcggccgttttc
ggcggtttagttcggaagagggaggagggtagtgaaaagaatgaagatgtaacacgtctt
ggtgctttagagagaataaagaggcagaaggcaagctga
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