Prosopis cineraria: 129305823
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Entry
129305823 CDS
T09047
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129305823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcin03041
]
129305823
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129305823
Spliceosome [BR:
pcin03041
]
Complex C
Other components
Step II factors
129305823
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
AAA_16
Sigma54_activ_2
GIPC1_GH2
Cas3-like_C_2
TsaE
Flavi_DEAD
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
129305823
NCBI-ProteinID:
XP_054801922
LinkDB
All DBs
Position
Unknown
AA seq
1182 aa
AA seq
DB search
MAIEEDGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGRNSENVEEFDAKLKENG
AEMPDYFVKTLLTIIHAILPPRPKSEKESSKDSAADGSNTKFKALAIADDRNRAKELEKE
LEMEARQNHGEREREDEDKYRSRDRDRRDRRRDRYEREERHRERDRDRDYEYEDERRDYR
SNGRHGDRHERRRRDGHEENRYGKENGDEDRDRKSHRDRRYGSNEPELYMVYKGRVSRVM
DTGCFVQLDDFRGKEGLVHVSQMATRRISNAKDVVKRDQEVYVKLISISGQKLSLSMRDV
DQHTGKDLLPLKKSSDDDAFRMNPQDSKEGPVTRTGLSGIKIVEEDDYVGSSRRPLKRMS
SPEKWEAKQLIASGVLSVTEYPTYDEEGDGVLYQEEGAEEELEIEMNEDEPAFLHGQSRY
SMDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPE
SGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQ
AVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGC
RLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDESLSQYSVIMLDEAHERTIHTDV
LFGLLKQLVKRRPDLRLIVTSATLDAEKFSGHFFNCNIFTIPGRTFPVEILYTKQPESDY
LDAALITVLQIHLTEPEGDVLLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSAL
PSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVI
TPISQASAKQRAGRAGRTGPGKCYRLYTEAAYRNEMSPTTIPEIQRINLGTTTLTMKAMG
INDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLAS
VDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKN
FSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAA
RKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVEL
APRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggctatcgaggaagatggactgaagaagcttgagtacttgtctctcgtttccaaggta
tgcactgagctagaatcccacaccggcaccggcgataaagtcctcgctgagtttattaca
gagttgggtcggaattctgagaatgtggaggaatttgatgccaaattaaaggagaatgga
gcggagatgccggattattttgtcaaaacacttctgactatcatacatgccattcttcct
cccaggcccaagtcggagaaggaatcgagtaaagatagcgccgccgatggaagcaatacc
aagtttaaggccctagccattgcggacgataggaatcgagcaaaagaactcgagaaggaa
ttagagatggaggctagacaaaaccatggagagagggaacgggaagacgaggataaatac
agaagtagagacagagataggagagacaggcgtagggataggtacgaaagagaggagagg
catagagaaagagacagagacagagactatgaatatgaggatgagagaagggattaccga
agtaacggaagacatggggacagacacgagaggcgtaggagagatgggcatgaagagaat
cgatatggaaaggagaacggtgatgaagatagagacaggaaatctcatagagatcgaagg
tacggctctaatgaaccagaattgtatatggtttataaaggtagagtgtcaagggttatg
gatacaggatgctttgttcagttagatgattttagaggaaaggagggtttagtacacgtt
tcccagatggcaacacgaagaattagtaatgctaaggacgttgtgaagagggaccaggag
gtttacgtgaagctaatatcaatttctggtcagaagttgagtctgtcaatgagagatgtt
gatcagcacactgggaaggatcttcttcctttgaagaagagctcggatgatgatgctttc
cgaatgaatcctcaagattcaaaggagggaccagtaaccaggacaggtctttcggggata
aagattgtggaagaggatgattatgttggttcttcacgcagacctttaaagagaatgagc
tctcctgagaaatgggaagcaaagcagttaattgcttcaggtgttttaagtgttacagag
tatccaacttatgatgaggagggagatggagtgctataccaagaggaaggagccgaagaa
gaacttgagatcgaaatgaatgaggacgaacctgcttttctgcatgggcagagtaggtat
tcaatggacatgtcacctgttaagatcttcaagaatcctgaaggttccctaagtcgtgct
gctgccctacagtctgcacttataaaggagcgcagagaagtacgagaacaacaacaacgc
acaatgcttgattctattccgaaggatctcaatcgtccttgggaagaccccatgccagag
tcaggtgaacgacatctggcacaggagcttaggggtgttggtttatcagcctatgacatg
cctgaatggaagaaggatgcttatgggaagaccatcacttttggacaaagatcaaagctc
tccattcaggaacagaggcagagcctaccaatctacaaattaaagaaagagctgattcaa
gctgtgcatgacaatcaggttctggtggtgattggtgagacaggttcaggtaaaacaact
caagtcacacagtatctcgctgaagctggttacactacaagaggtaaaattggatgcact
cagcctcgtagggtggctgctatgtcagtggcaaaacgagttgctgaagagtttggttgt
cgattaggtgaggaagttggttatgccattcgatttgaggattgcactggaccagatact
gtgatcaagtacatgacagatggcatgcttcttagggaaatattggttgacgagagtctg
tcacaatattctgttataatgcttgatgaagctcatgaaagaactattcatactgatgtt
ctttttggactattgaagcagctggtgaaacgtagacctgacttgcgattgattgtcaca
tcagctacactagatgctgagaaattttcagggcatttctttaactgtaacatttttaca
attcctgggaggacttttcctgtggagatactttataccaagcaaccagaaagtgattat
ttagatgcagccttaatcactgtcctacagattcatttgacggaaccagaaggagacgtc
cttctcttcttgactggtcaagaggaaattgattttgcatgtcagtctctttacgagaga
atgaaaggattaggtaagaatgttcctgaattgattattctgcctgtctatagcgctctt
cctagtgaaatgcagtctaggatatttgatcccgcgcccccaggcaaaagaaaagtggtt
gtggcaactaatattgctgaggcttctttgacaattgatggtattttttatgtaattgac
cctggatttgctaagcaaaatgtatacaacccaaaacaaggacttgattctttggtgata
actccaatttcacaagcatcagccaaacaaagagctgggcgtgcagggcgtactgggcct
ggtaaatgttaccgcctctatactgaggcagcatatagaaatgagatgtctcctactact
attccagaaattcaaaggataaatcttgggacaactactcttacgatgaaagctatgggt
ataaatgatcttctgtcctttgattttatggatcctccttcaccccaggctctcatttca
gccatggaacagctgtatagccttggggcactggatgaagagggccttttaactaaatta
ggaaggaaaatggcagaatttcctctagatccaccattgtccaagatgctacttgccagt
gtggaccttggttgtagtgatgagatactgaccataattgccatgattcaaactggcaat
attttttacaggcctagggaaaaacaagcccaagctgatcagaagagggcaaagtttttc
cagcctgagggtgaccatcttactctacttgctgtgtatgaggcttggaaagctaaaaat
ttttctggaccctggtgttttgagaattttgttcaatctcgatctttgagaagggcacag
gacgtcaggaaacagcttctcaccattatggataagtacaaattagatgttgtaagtgct
ggaaaaaacttcactaagatcaggaaggctattactgcgggatttttctttcatgcggct
agaaaggaccctcaagaaggttacagaaccctcgtcgagaaccagcctgtatatattcat
cccagttcagctttgttccagagacagccagattgggtcatctaccatgagcttgtgatg
acaacaaaagaatatatgcgtgaggtcactgtcatagatcccaaatggctagttgaattg
gctccaagattcttcaaagtggcagatcctacaaaaatgagcaagcggaagagacaagag
cgtatagagccactttatgacagataccatgagccaaactcgtggcgtttgagcaaacgc
cgtgcttga
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integrated database retrieval system
