Prosopis cineraria: 129306939
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Entry
129306939 CDS
T09047
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129306939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129306939
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129306939
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129306939
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DEDDh_C
Motif
Other DBs
NCBI-GeneID:
129306939
NCBI-ProteinID:
XP_054803737
LinkDB
All DBs
Position
Unknown
AA seq
280 aa
AA seq
DB search
MPHSDSPPSPQRSVIVRSVWSANLESEFQLIRSIIDSYPLISMDTEFPGVVVRPDTGDPN
VRHRNPTAHFAVLKANVDRLHLIQIGLTLSDDSGNLPNLGTGELYIWEFNFRDFDVARDA
HAHDSIELLRRQGIDFEKNRELGIDSVQFAELMMSSGLVCNEDVSWVTFHSAYDFGYLVK
MLTQRPLPTELDDFLRLVRVFFGDRVFDVKHLMKFCSNLHGGLDRICKSLSVERITGKSH
QAGSDSLLTLHAFQKIREVHFGKDDELIKYAGVLYGLEVF
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgccccactccgactcgcccccgtcgcctcaaagatctgtcatagtacggtcagtatgg
tccgccaatctggaatccgagtttcaattgattcgatcaataatcgattcataccctttg
atttccatggacaccgagtttccaggcgtcgtcgtccgtcccgacactggtgatcccaat
gtccgacatcggaaccccaccgctcacttcgctgtcctcaaagctaacgttgatcgtttg
cacttgatccagatcggtctcactctttctgatgatagcggcaaccttcccaatctaggc
actggcgaactgtacatctgggagtttaatttcagagattttgatgtggctcgcgatgct
cacgctcacgattccattgagttgttgaggcgccagggaatagatttcgagaagaacaga
gagctggggatcgactcagtacaattcgccgagttaatgatgtcctcgggactcgtgtgc
aatgaagatgtgagctgggtgacatttcacagtgcgtatgacttcggatacttagtcaag
atgctgactcaacggccattgccgactgagttggacgacttccttcgtcttgtgagggtg
tttttcggggacagggtttttgatgtgaagcacttgatgaagttctgttccaacctccat
ggtggattagaccgaatttgcaagtccctgagcgtggaaagaatcacaggaaaaagtcat
caggctggttcagatagcttgctgactttacatgcatttcagaagatcagggaggttcat
tttggcaaggatgatgagctaatcaaatatgccggcgtcttatatggtctagaggttttt
tga
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