Prosopis cineraria: 129307490
Help
Entry
129307490 CDS
T09047
Name
(RefSeq) polyadenylate-binding protein 7-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
pcin
Prosopis cineraria
Pathway
pcin03015
mRNA surveillance pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129307490
09123 Folding, sorting and degradation
03018 RNA degradation
129307490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129307490
03041 Spliceosome [BR:
pcin03041
]
129307490
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129307490
mRNA cycle factors
Stress granule specific factors
129307490
Spliceosome [BR:
pcin03041
]
Complex C
Other components
Complex C specific factors
129307490
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
Nup35_RRM_2
RBD_DEAH11
RRM_7
RRM_Nup35
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
129307490
NCBI-ProteinID:
XP_054804444
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MAVPLTVAAARASLYVGDLHPDVSDGQLLELFLEFKSLTSVRICRDSSTGRSLCYGYVNF
NSPQDAIRAIEVKNHFKLNGKMIRVMWTHRDPEARKSGKANVFVKNLAEPIDNAGLHELF
QKFGKILSTKVVTSEYGKSKGYGFVQFESEDSANVAIEKLNGSTVRDKLIYVGKFVKKSE
RLLPGPDSKFTNLFMKNLDPETTEELLQEKFAPFGNIVNLAVAKDNNGVSKGFGFVNYDN
PDDAKRAMETMNGSRLGSKIIYVARAQKKAEREKILHHQFEEKRRQRILKYKGSNIYVKN
IDDDVNDEELRHHFSSCGTITSAKVMRDDKGISKGFGFVCFSAPEEANRAVNIFHGCMFH
RKLLYVAIAQRKEDRQAQLKVQYAPGIAGLAGPPTAVIPGGYPPYYYEATGVVSQLPYRP
GLVYQPLGLRPGWRPNGFAPPTRPAQQAPFSVPATSMRPHRQNRSRMNGQAISQGNVRLG
KFMPQAQHPSQPMVSSKESTTRQVRFAFAAQEWQQQKQLLGEHIYRRVHKLKPSLAAKIT
GMLLEMEIGELLLLLESPRSLFAKVEEAVQVLKNSKT
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcctctaacggttgccgccgcacgggcttcactttacgtcggcgacctccac
cctgacgtcagcgatggacagctgctcgaattgttcttggagttcaagagcctcacttct
gttcggatctgtagggactcctccaccggcaggtctctatgttatggctatgtcaacttc
aactctcctcaagatgctattcgtgctattgaggtgaagaatcattttaaactgaacggg
aaaatgataagggtcatgtggacccatcgtgaccccgaagcaagaaaaagcggcaaagcg
aacgtatttgttaagaacttagctgaacctatagataatgcgggattacacgaactgttt
caaaaattcgggaaaatcttgtccaccaaagttgtcacgtctgaatatgggaagagcaag
gggtatggcttcgttcaatttgagtcagaggactctgcaaatgtcgccattgaaaagctg
aatggctccactgttagagataaactgatatatgttggtaagtttgtcaaaaaaagtgaa
cgtctcttgcccggtcccgattccaagttcacgaatttgtttatgaaaaatctggaccca
gagaccacagaagagcttctgcaggaaaagttcgccccttttggaaacattgttaatttg
gctgttgctaaggacaacaatggagtatcaaagggtttcggctttgtgaactatgataat
ccagatgatgctaaacgggcaatggaaaccatgaatggatcacgactaggttcgaagatt
atatatgtagccagagcgcaaaagaaggctgagcgtgaaaagatcttgcaccatcagttt
gaggagaagcgtaggcaacggatcttgaaatataagggatcaaacatttatgtgaaaaac
attgatgatgatgtcaatgacgaagaactaagacatcattttagttcatgcgggacaata
acgtctgctaaagttatgcgggacgacaaaggaataagcaaggggtttggttttgtctgt
ttctccgctcctgaggaggccaatagagctgtaaacattttccatggatgcatgtttcat
cgtaaactgctatatgttgccatagctcaaaggaaggaagacaggcaagcacaattaaag
gtgcagtatgcaccgggaatagcaggactagctggacctccaaccgctgttatacctggt
ggatatcctccttactactacgaagccactggtgttgtttcacagctgccatatcgaccc
gggctagtttatcaaccgctgggattgaggccaggatggaggcctaacggctttgcacct
ccaacaagaccagctcaacaggctccattttctgttcctgctacttctatgaggccgcac
agacaaaacaggagtaggatgaatgggcaggcaatttcgcaggggaatgttcgcttgggt
aaattcatgccacaagcacaacacccttcgcagccaatggtctcttcaaaagaatcaact
actcggcaggttcgctttgcttttgctgctcaggagtggcagcagcaaaagcaactcctt
ggcgagcatatttaccgacgggtacataaactcaagcctagcctggcagcgaagattact
gggatgctcctggaaatggaaattggtgaattgctgcttctcctggaatctccaagatct
ctttttgccaaggtggaagaagctgtgcaggtgcttaagaactccaagacttga
DBGET
integrated database retrieval system
