Prosopis cineraria: 129308473
Help
Entry
129308473 CDS
T09047
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129308473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcin03041
]
129308473
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129308473
Spliceosome [BR:
pcin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129308473
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
T2SSE
nSTAND3
SRP54
PWI
Sigma54_activ_2
Cas3-like_C_2
TsaE
ABC_tran
AAA_16
AAA_7
Flavi_DEAD
AAA_23
Motif
Other DBs
NCBI-GeneID:
129308473
NCBI-ProteinID:
XP_054805556
LinkDB
All DBs
Position
Unknown
AA seq
1052 aa
AA seq
DB search
MGNDDSLKAWVSDQLMSLLGYSQPTIIQYIIGLSKQATSPADVVGKLVEFGCSSTGETCA
FAEEIFARVPHKSSGLNIYQKQEREAAMLVRKQKTYTILDADDDDDSNDGSSMRTGSESR
KTEGRKKRFRKKNEVDDDEDDEVIAREEKERQVKRRISPDEDDGSESEEERLRDQKEREE
LEQHIRERDAAGTRKLTEQKLTRKEEEEAIRRANAAEQNDIESLRKVSRQEYLKKREQKK
LDELRDDIEDEQYLFEGVKLTEAEYREFRYKKEIYDLVKKRSMEEDDVNEYRMPEAYDHE
GVVNQEKRFAVALQRYRDPNAEEKMNPFAEQEAWEEHQIGKATLKFGSKNKKQTSDDYQF
VFEDQIDFIKASVMDGDEFDNEEMTDSLEKSKAKTASEALQEERKTLPIYAFRDELIQAV
HEHQVLVIVGETGSGKTTQIPQYLHEAGYTKNGKIACTQPRRVAAMSVAARVSQEMGVKL
GHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLNSYSVVMVDEAHERTLSTDILF
GLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHYTKAPEADYLD
AAIVTALQIHVTQPLGDILVFLTGQEEIETAEEIMKYRIKGLGTKIAELIICPIYANLPT
ELQAKIFEPTPERARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLITP
ISKASANQRAGRSGRTGPGKCFRLYTAYNYYHDLDDNTVPEIQRTNLANVVLTLKSLGIH
DLLHFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDN
YKCSEDIISIAAMLSIGNSVFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWKETN
YSTQWCYENYIQVLYVSLQVRSMKRARDIRDQLAGLLERVEIELTSNEGDPDAIKKSITS
GFFPHSARLQKNGSYRTIKHPQTVHIHPSSGLSQVLPRWVVYHELVLTTKEYMRQVTELK
PEWLVEIAPHYYKLKDVEDAASKKMPRGAGRA
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggggaatgatgatagtttgaaggcatgggtatcagaccagttaatgtcactactggga
tattctcagcccactatcatacaatacattattggactatcaaagcaagctacttcacca
gctgatgtggtgggcaaactggttgaatttgggtgctcatcaacgggtgagacttgtgca
tttgctgaagagatttttgcaagagttcctcacaaatcatctggcttaaatatttatcag
aaacaagagcgagaagctgcaatgctggttagaaagcaaaagacttacacgattttggat
gctgatgacgatgatgacagcaatgatggatcttccatgcgaactggttctgagtccaga
aagactgaaggtcggaaaaaacggttcaggaagaaaaatgaagtggatgatgatgaagat
gatgaggtaattgcaagggaggaaaaagagagacaagttaagaggcgaatttcaccagat
gaagatgatggttcggagtcagaagaagaaaggttgcgtgaccaaaaagaaagggaggaa
ttagagcaacatataagagaacgagatgcagcagggacaagaaagttaactgagcaaaaa
ttaacacgaaaggaggaagaagaggcaattcgaagagctaatgctgcagagcagaatgat
attgaaagtctaagaaaggtttcaaggcaagaatacttgaagaaaagggagcaaaagaaa
ttagatgaactgagagatgatatagaagatgagcaatatctatttgaaggggtgaagctt
acagaagcagaataccgtgagttcaggtataagaaagagatttatgatcttgtaaagaag
cggtcgatggaggaagatgatgtgaatgagtacaggatgccagaagcttatgatcatgaa
ggggttgttaatcaggaaaagagatttgctgtggctctgcagcgctacagggatccaaat
gctgaggagaaaatgaacccatttgctgaacaagaagcatgggaggagcaccaaattggg
aaggcaacgttgaagtttggttctaaaaataaaaagcaaacatctgatgactatcagttt
gtgtttgaggaccagatagattttattaaagcatcagtgatggatggagatgagtttgat
aacgaggagatgacagattcacttgaaaagtccaaggccaagacagcttcagaggcactt
caggaagagaggaaaacattacccatctatgcatttcgggatgaattgatccaagctgtt
catgaacatcaggtacttgttattgttggtgaaactggttctggaaagactacccagata
ccccaatatcttcatgaagctgggtacacaaagaacgggaagattgcatgtactcagcct
cgacgtgttgctgctatgagtgttgctgctcgagtctcacaggaaatgggtgtgaaatta
ggacatgaggttggttactccattcgttttgaggactgcacctctgagaagactattctg
aaatatatgacagatggaatgctgttgagagaatttcttggtgaacctgatctgaatagc
tacagtgttgtgatggtggatgaggctcatgaaagaacactttcaactgatattttgttt
ggattagtaaaggatatttctcgttttcggcctgatcttaagttgctgatctcgagtgcc
acacttgatgcagagaagttcagtgattattttgattctgctcccatattcaaaattccg
gggagacgatatcctgttgaaatacactataccaaggcaccagaagctgactatttagat
gctgctattgtaactgctctccaaatccatgtaactcaacctcttggggatatattggtg
ttcttaactggtcaagaagaaattgaaacagcagaagagatcatgaaatatcgaattaag
ggcctggggactaaaattgctgagctaattatctgtcctatatacgcaaaccttccaact
gagctgcaagccaagatatttgaaccgactcctgaaagagcacggaaggtagtccttgct
actaatattgccgagacatcattgactattgatgggatcaagtatgttattgatccaggg
ttttgtaagatgaaaagttataatccaagaacaggaatggaatccttgttaataacacca
atttcaaaagcatctgcaaatcaacgagccggtcgctctggaagaacaggtcctggaaag
tgcttccggttgtatactgcatacaattattaccatgatttagatgacaacactgtacca
gaaatacaacggactaatcttgcaaatgtagttttgactttgaaaagccttgggattcat
gacttgctgcactttgattttatggatcctccacctgctgaggctttattgaaggcactg
gagcttctatttgcattgagtgcgttaaataagcttggtgagttaacaaaggtaggtaga
cggatggcagagttcccccttgatcccatgttatctaaaatgatagtggcttcagacaat
tacaagtgttcggaggatatcatttctatcgctgctatgctttctattgggaactcggta
ttttaccgtccgaaggataaacaagtacatgcagataatgcacgcatgaatttccacact
ggaaatgttggagatcatattgcactgctaaaggtatacaattcatggaaggagaccaat
tactctacacagtggtgttacgaaaattatatacaggtgctttacgtcagtttgcaagtg
cggagtatgaaacgggctagggatatccgagatcaacttgcaggccttttggagagggtt
gaaattgaactaacttcaaacgaaggtgatccggatgccataaaaaaatcgataacatct
ggctttttcccacattctgcaaggctgcaaaagaatggatcttatcggaccataaaacat
ccacagactgttcatatacatcctagttctggattgtctcaggtgcttccaagatgggtt
gtatatcatgaactggttcttactaccaaggagtacatgagacaggtcacagaactaaag
ccagagtggttggtggagatagcccctcactattacaagcttaaggatgttgaagatgct
gcttccaagaaaatgcctcgaggagcaggacgagcatga
DBGET
integrated database retrieval system
