Prosopis cineraria: 129308507
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Entry
129308507 CDS
T09047
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129308507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcin03041
]
129308507
03009 Ribosome biogenesis [BR:
pcin03009
]
129308507
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129308507
Spliceosome [BR:
pcin03041
]
Complex A
U1 snRNP components
U1 related factors
129308507
Complex B
129308507
Ribosome biogenesis [BR:
pcin03009
]
Eukaryotic type
Pre-60S particles
Helicases
129308507
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
129308507
NCBI-ProteinID:
XP_054805610
LinkDB
All DBs
Position
Unknown
AA seq
1153 aa
AA seq
DB search
MATAEAAPAALGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTALPLPLP
AGPPAAASTPKLAPIPAAHSVQPGGVVAQHGQQLLQTSHQQGQQMSHLSQQHSPQVAQVA
QQQPSQGAQAGQQQSSQSLQSMPQPGLQQVRQPQMLQPLSQQIPPHQMHHQMPQQAIHSQ
PFGQGATQDHSSYMGQPQAHQFSHQNPHYMPYSQSMHSNGQQSSQPIQHNMHGQPLENQQ
EFKAAFPKIEDVDFKNGSQVGLSPSQYQQKSALPLQSNQNIPVGISSVQGPRVGVHAGQA
QPFGALSGSMQQPSAAIQSQQGSADLVYQHRHSFQNQMGPGMMHGQPSNAHPVDLKMGHE
DNLRVRAANEYYYNSGKEMTSMGSQQPNIAPIPISRNQQAYQQDMRIGSSPFQNATPGGN
GVNGVPGDGMHNMFNPPIGGPPPVASNSLTRPHVTDLSPAEIYRQQHEVTATGDNVPPPF
MTFDAAGFPPEILREIYSAGFSTPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAF
MILRQRRNNPQNGPTVLVLAPTRELATQIQDEAIKFGQSSRVSCTCLYGGAPKALQLKEL
DRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQ
TLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQII
RAQERGSKVIIFCSTKRLCDQLARGMGRNFGAAAIHGDKSQGERDWVLNQFRTGKSPILV
ATDVAARGLDIKDIRVVINYDFPNGIEDYVHRIGRTGRAGATGVSYTFISEQDWKHAGDL
IKVLEGANQLVPPELRQMALRGPANFGKDRGGMSRFDSGGGRWESGGRGGTRDGGFGGRG
GMRDGSFGGRGGMRDGGGFGGRGGMRDGPGVQGGRGDFFPGRGNRGRGMGGPRGGHVGWG
RGERDSHDRYSMDGRGRGRGRGRFDNRRDMSYRNRGRSYSRSPERVRTWDYSRSRSRSRS
RTRSRSRSWSRGRSRSRSWSRGQSRSYSRSCSRSHGRRSRSYSRSRSRSRSCGRSQSHSN
DRRDRPDQLISDQNEHRAQVEATEPRTVTTSSRSQGNSLLGTEHVERLPDVGSIETVNSG
AVVDPCLQSDPNV
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagctgaggccgctccggctgctcttggtccacgatacgcacctgatgatccc
acccttccaaaaccctggaagggattgattgacggaagtacgggtctattatactattgg
aatcctgaaaccaacatcacccagtatgaaaagcctacagcgctgccactacccttacct
gctgggccacctgctgcagcttctacgcccaagttggctcccataccagcggctcattca
gtgcaacctggtggggtggtggcacagcatgggcagcagttactacaaacctctcaccaa
cagggacagcaaatgagccacctatcccaacagcatagtccccaggtggcacaggttgct
cagcagcaaccttctcaaggagcacaagctggacaacaacagagttcacagtcactgcag
tctatgccacaaccaggtttgcaacaagtccgacagccgcagatgttacagcctctgagt
cagcaaattccaccacaccaaatgcatcatcagatgccacaacaagccatccattcacaa
ccttttgggcaaggagctacccaggatcatagttcatatatgggacagccacaagctcat
caattcagtcaccagaacccacattacatgccgtattcacaaagcatgcactcaaatggg
cagcaaagttcccaaccgatccagcataacatgcatggtcagccattggaaaatcaacag
gagtttaaagcagcattcccaaagatagaggatgtagattttaaaaatggaagtcaagtt
ggactttcaccatcccagtatcaacaaaagagtgccttgcctctgcaaagcaatcagaac
attcctgttggtatttcctctgtccaggggccacgtgttggtgttcatgctggccaagca
caaccatttggtgctttgtctggtagcatgcagcaaccttctgcagcaattcaatcgcag
cagggtagtgctgatttagtttatcaacatcgtcatagttttcaaaaccagatgggccca
ggaatgatgcatggtcagccatctaatgcccatcctgttgacctaaagatgggacatgag
gataatttacgtgttagagctgcgaatgaatattactacaactctggcaaggagatgaca
tcaatgggttctcagcagccaaatattgcaccaatacctatttcaagaaatcagcaggct
tatcagcaggatatgaggatcggcagttccccttttcaaaatgcaacgcctggtggaaat
ggggtaaatggtgtcccaggggatggtatgcataacatgtttaatcctccgattgggggc
cctccaccagttgctagcaactccttgacaaggcctcatgtcactgatctgtcacctgct
gaaatttaccgtcagcagcatgaagttacagcaacgggtgacaatgttcctccccccttc
atgacatttgatgctgctgggtttcctccagagattttgagagagatctattctgcgggc
ttctcaactccaacacctattcaagctcaaacatggcctgttgcactacagggtagggac
atagtggctattgccaaaacaggctctggaaagacattgggttacttaatgccagcattt
atgattcttagacagaggcgtaacaatccccagaatggccccacagtgttggtattggct
ccaacacgtgaacttgcaacacagattcaagatgaagccataaaatttggccaatcttca
agggtctcctgcacgtgcttgtatggtggggcaccaaaagctcttcagctaaaagagtta
gatcgtggagcagacattgtcgttgctacacctggccggctcaatgacatacttgagatg
aagaaaattgactttgggcaagtctcacttcttgtgcttgatgaggctgatcgaatgctt
gatatgggttttgagcctcaaatccgtaagattgtgaatgagataccgccacgcaggcaa
actcttatgtacacagcaacatggcctaaagaagtacgaaaaattgctggtgacctcctt
gttaatcctgtccaagttaatattggaaatgttgatgagcttgctgcaaataaagctatc
acacagtatgttgaagttgtcccacaaatggagaaacaaaggcgtttagagcagatcatc
agagcccaagaacgaggttccaaggtcataatattttgttccacaaagaggttatgtgat
caactggcccgtggcatgggccgtaattttggagctgctgcaatccatggagacaagtct
caaggtgaaagagactgggttttgaatcagtttaggactgggaagtcgccaattctagtt
gccactgatgttgctgcccgtgggcttgacatcaaggatataagggttgtgatcaactat
gatttccctaatggaattgaggactatgtgcaccgtattggacgaacaggaagggctgga
gccaccggagtgtcatacacctttatctctgagcaggactggaaacatgcaggtgacttg
attaaagttttggagggtgctaaccagcttgtgcctccagagttacgacagatggcattg
cgtgggccagctaactttggaaaggataggggtggaatgagccgttttgactctggtggt
ggccgttgggagtctggtggccgtggtggcacaagagatggcggctttggcggtcgtggt
ggcatgagagatggcagctttggtggtcgtggtggcatgagagatggtggtgggtttggt
ggtcgtggtggcatgagggatggtccaggtgtgcaaggtggaagaggtgatttctttcct
ggtaggggcaacaggggtcggggaatgggtggccctagaggtggtcatgttggctggggt
aggggtgaacgtgactctcatgatcgttacagcatggatgggcgaggacgtgggcgtggc
cgtgggcgttttgacaacagaagagatatgagttacaggaatagaggcagaagttacagc
cgcagtcctgaaagggttcgaacatgggattatagcagaagtcgcagtagaagcagaagc
agaacacgaagcaggagtaggagctggagtaggggtcgcagtcgaagtcgcagctggtct
cgtggccagagtcgcagttacagccggagttgcagtcgcagccatggccgcaggagtcga
agttatagccgcagccgcagccgcagccgcagttgcggccgtagtcaaagccacagcaat
gatagacgtgatagaccggatcaacttatttctgatcagaatgagcatagagcacaagta
gaagctactgaaccaagaacagtcactacgtcttccaggtcccaggggaactcacttctg
ggtactgaacatgtggagcggctaccggatgttggtagtattgagacagttaattcaggg
gctgtagtggacccttgccttcaatcagatcctaatgtctag
DBGET
integrated database retrieval system
