Prosopis cineraria: 129308550
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Entry
129308550 CDS
T09047
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
pcin
Prosopis cineraria
Pathway
pcin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
129308550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcin03400
]
129308550
DNA repair and recombination proteins [BR:
pcin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
129308550
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
129308550
NCBI-ProteinID:
XP_054805696
LinkDB
All DBs
Position
Unknown
AA seq
942 aa
AA seq
DB search
MDENLEEQNKLPELKLDAKQAQGFLHFFKTLPHDPRAIRLFDRRDYYTAHGEDATFIAKT
YYRTTTALRQLGSRFDALSSVSVSRNMFETIARDLLLERTDHALELYEGSGSNWRLIKSG
TPGNISSFEEILFANSEMQDSPVVVALLPNFQENGCTIGLGYVDLTKRVLGMAEFLDDSH
FTNVESALIALGCKECLLPMESGKSNETRMLYDAVTKCGVMLTDKKKSEYKTRDLVQDLS
RLVKGSIEPIRDLVSGFEFAPGSLGALLSYTDLLADESNYGNYTLEKYKLDRYMRLDSAA
MKALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEINSRLDVVQAF
VEDAVLRQDLRQHLKRISDIERLVRNLKKQRAGLQHVVKLYQSCIRLPYIKSALEICDGQ
FSSTMKEKFFKPLELWTGDDQLNKFIGLVEAAIDLEQLENGEYMIASSYDSTLTNLKKEQ
ESLESSIHNLHQQTAKDLDLPIDKALKLDKSTQFGHVFRITKKEEPKIRKKLSTEFIVLE
TRKDGVKFVNSKLKRLGDQYQKIVEEYKNCQKEFVNRVVRTVATFSEVFESLAGLLSELD
VLLSFADLASSCPTPYTRPDITSSDEGDIILEGSRHPCVEAQDWLNFIPNDCKLIRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVS
TFMQEMLETSSILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVELIKAPTLFATH
FHELTDLAYEKGNDDPQRKIVGVANYHVNAHIDSSTRKMTMLYKVEPGACDQSFGIHVAE
FANFPESVIAMAREKAAELEDFSPSAINMVDATQEVGSKRKREFELDEVSKGAARARQFL
EAFAALPLGTMDKMQALQEIRKLKDDLENDAQKCCWLQQFLR
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaatcttgaggaacagaacaagctccctgagctcaaattagatgctaagcaa
gcccagggctttctacattttttcaaaaccctacctcatgacccgagggcaattcgatta
tttgatcgccgggactactatactgctcatggtgaggatgcaacttttattgctaagacc
tattaccgtactaccactgcattaaggcaactgggtagcagatttgatgcactatccagt
gtcagtgtcagtaggaatatgttcgaaacaattgcccgagatctacttctggagagaaca
gaccatgctcttgagctctatgaaggaagtggctctaactggagactaatcaaaagcgga
acacctggtaatataagcagttttgaagaaattctgtttgctaacagtgaaatgcaagat
tcccccgttgttgttgccctattacccaactttcaagaaaatggatgcaccattggattg
ggatatgttgatctgactaagagagtacttgggatggctgaatttcttgatgatagtcac
tttactaatgtggaatcagctttgattgctcttggttgcaaggaatgtcttctgccgatg
gagagtggcaaatctaatgaaactaggatgttgtatgatgcagtgactaagtgtggtgtg
atgttaacggacaaaaagaaatctgagtataaaaccagggatctggtacaagacctcagc
aggcttgttaaaggttcaattgaaccaattcgtgatttagtgtctgggtttgaatttgct
cctggttctttgggtgcattactgtcttatacagatttacttgcagatgaaagcaattat
ggaaattatactcttgaaaaatacaaacttgaccgctacatgaggttagattctgctgcc
atgaaggctcttaatgtcatggaaagcaaaactgatgcaaacaaaaatttcagtttgttt
ggtctcatgaatagaacctgcactgctggaatggggaaacggttgttgcacatgtggctt
aagcagcccctattagatgtaaaagaaattaactcaaggctggatgtagtgcaagcattt
gtagaggatgctgtgcttcgtcaagatctgaggcaacatctgaaaagaatatcagacatt
gagcgactggtgcgaaatcttaaaaagcaaagagctggtctgcaacatgttgtaaaactt
tatcagtcttgcataaggctaccttacatcaaaagtgcactggaaatatgcgatggacag
ttttcctcaacgatgaaggagaagtttttcaaacctcttgagttatggactggtgatgat
cagctaaacaaattcattggtcttgtagaagctgcgattgaccttgagcaattggagaat
ggggaatacatgattgcttcaagttatgattctacattaactaatctgaagaaagaacaa
gaatcgctagagagctcaatacacaacttgcaccaacaaactgcaaaagatcttgatcta
ccaatagataaggcattaaagttagacaaaagcacacaatttggacacgtcttcagaatc
acaaagaaggaagagccaaaaataaggaagaagctcagcactgagtttattgtattggag
accaggaaagatggagtgaagtttgttaactcaaagcttaaaaggcttggggatcaatat
cagaagatagttgaggagtacaagaactgtcaaaaagagtttgtcaatagagtagttcga
actgtagcaactttctctgaggtgttcgagtctttagctggattactttctgaattggat
gtcctactaagctttgctgacttggcttctagttgtcctactccttacacaaggcctgac
atcacttcatcggacgaaggagatattatcttagagggcagcagacacccttgtgttgag
gctcaagactggttgaattttataccaaatgattgcaagcttatcagaggaaaaagttgg
tttcaaataataacagggcctaacatgggtgggaaatcaacatttatccgacaggtgggt
gtgaatattttgatggcacaagttggttcttttgttccttgtgacaaggccagcatatct
atccgtgattgcatttttgctcgtgttggtgctggtgactgccaacttcgaggagtctcc
acatttatgcaagagatgcttgaaacttcatcaatattaaaaggtgccacagacaagtcc
ttgataatcattgatgagttgggacgtggaacatcaacttatgatggatttggtttggca
tgggccatttgtgagcacattgttgaactgatcaaggcacctactttgtttgcaacccac
tttcatgaactgactgatttagcctatgaaaaaggaaatgatgatccacagaggaaaatt
gttggtgtggcaaactatcatgttaatgcacatattgactcatcaactcgcaaaatgact
atgctctacaaggttgaaccaggagcttgtgatcagagttttggtattcatgttgctgag
tttgcaaatttcccagaaagtgtcattgctatggctcgagaaaaagcagcagaattggaa
gatttttctccatctgctataaacatggttgatgctacgcaggaggtgggttctaaacgg
aagagagagtttgaacttgatgaagtttctaaaggagcagcaagggctaggcaatttctt
gaagctttcgctgctttgccattgggaactatggataaaatgcaagctttgcaagaaata
aggaagttaaaggatgatttagagaacgatgcacaaaaatgttgctggctgcagcaattc
ttgcgttaa
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