Prosopis cineraria: 129308648
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Entry
129308648 CDS
T09047
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129308648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcin03041
]
129308648
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129308648
Spliceosome [BR:
pcin03041
]
Complex C
Other components
Step II factors
129308648
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
RRM_DEAH11
KH_DEAH11
KH_DEAH11_1st
Helicase_C
IBR
DEAD
OB_NTP_bind
AAA_22
AAA_19
IBR_1
HA2_N
ResIII
zf-C3HC4_2
KH_Vigilin
ABC_tran
T2SSE
AAA_29
AAA_30
Arc_MA
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
129308648
NCBI-ProteinID:
XP_054805886
LinkDB
All DBs
Position
Unknown
AA seq
1739 aa
AA seq
DB search
MKKAYRPIHQPGFPRNPEVHRNFHPPSYCRPRGKPEFRPNQRLDRPPENSTHARRPNFVV
QLRAGRRDFVRADVEALIAKCKSKPESFSVFPGDHVAARLNFCQWCDALEAFVCFWECCF
NEVHAFMPELISHVLVPSDMDELRDRLRVLFASHVKGLMEGKEVKRWREESQRASKELSQ
LTYLLKRPKSFGLLDELQQKKKGLDAEKKLIEMRIKEFQSAMECILRYLEDRKVNEVGIS
VFGKLKFDETSDWKRIYRMIMRERRRLGEGLPIYAYRSDILQQIHSQQVMVLVGETGSGK
STQLVQFLADSSIIGANESIICTQPRKIAARSLALRVQEESNGCYENNSIKFYPTFSSSN
EFNCGIVFMTDNCLLQQYMKDDNLSGISCLIIDEAHERSLNTDLLLALIKSLLCRREEMR
LIIMSATADAKQLSDYFCGCGIFHVVGRNFPVEVRYVPSAYVGQSGPAIVASYVSDVVRM
ATEVHRTEKEGTILAFLTSQMEVEWACEKFEALSAVALPLHGKLSPEEQLCVFQNIPGKR
KVIFATNLAETSLTIPGVKYVIDPGFVKDSRYEPGSGMNVLKVCWISQSSADQRAGRAGR
TEPGRCYRLYSEFDYNSMAPNQEPEIRRVHLGVAVLRILALGVKNVQDFDYVDAPSPSSI
DMAIRNLIQLGAIRLNNNNYELTEEGRYLVKMGVEPRLGNLILGCYKYGLVKEGLTLAAV
MANASSIFCRVGNEGDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPQERKNKWCWENS
INAKSMRRCQDTIKDLESCLEYELDVVTPSYWRWDPYNSSDCDKYLKMAILSSLSENVAM
YSGCHQLGYKVALTGQLVQLHPSCSLLVFTEKPSWVVFGEILSASTQYLVCVNAFDVESL
CTLDPPPLFDVFEMERKKLQMKMWAGLGCILLKRFCGKGNCNLLGLVSRIRTACKDERIF
IEVNVDLNEIQLYASPRDMELAIAMVNEVLEYERKWLRAECLEKWLYRGSGVSSPVALFG
SGAEIKHLEVENRCLSVDVCHPNISSINDKELLMFLEKNSSSCICAVHKFTSVAQDVEDR
EKWGRISFLSPDAAKKAADLDGVEFHGLSLKIVHSQAASGGDRAFSFPAVKAKLCWPRRL
SKGFGILRCEIKDVTSILIDFRGLVIGGRAVRCEVGRRSLDSIVIGGLHKELSEPEILDV
LRTATSRRIVDFFLVRGDAVENPPCNVCEEALLKEISPFMPKRHPHTSPCHVQVYSPEPK
DAFMRALITFDGRLHLEAAKALEQIEGKVLPGCHSWQKIMCQQLFHSSLIFPLPVYRVIK
EPLDKLLASFSCKEGLKCELEMTANGSYRIKITANATKTVAEVRRPLEELTRGKTIVHMS
LSPPVLQLLLSRDGINLKSSVQQETETCILFDRHNLTLRVFGSPEKVDLAQQKLIQSLLT
LHESMQLKVHLRGRDLPPDLMKQVVKSFGPDLHGLKEKIPEADFTLNTRHQIIYLRGKME
LKTKVEELIHEIASSSSHLADRLGTGLDCPICLCEVEDGFQLENCGHLFCRMCLVEQCES
AIRNQGDFPICCTHAGCGDPILLVDLKALLSNEKLEELFRASLGAFVASSEGRYRFCPSP
DCPSIYRVASPSAAAGEPFVCGACYAETCTKCHLEYHPYVSCERYKGYKEDPDLSLKEWC
KGKEHVKACPACSYTIEKVDGCNHIECKCGKHVCWVCLDFFGTSDACYSHLRTIHMAII
NT seq
5220 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaagcctatcgacccattcaccagccgggtttcccgcgaaacccggaagtccat
cgaaattttcaccctccctcctattgccgtccccgtgggaaaccagaatttcgccccaat
caacgcctggaccgtccaccggaaaactctactcatgcccggcgacctaatttcgttgtt
cagctccgcgctggccgtcgagatttcgtcagggcggatgtggaggccttgatcgcaaaa
tgcaagtccaagcccgaaagtttcagtgttttccctggtgatcatgttgctgctcgcctt
aatttttgccagtggtgcgacgcgctcgaggcctttgtttgcttttgggagtgttgcttc
aatgaagttcacgcctttatgccggagctcatatcgcatgttctcgtaccttccgacatg
gacgaactgcgtgatcgacttcgggtccttttcgctagtcatgtgaagggcttaatggaa
ggcaaggaagtcaagagatggcgtgaggaaagtcagcgggcctcgaaggaactttcccaa
ttaacgtatttactcaagaggccgaaatcgttcggcttgttggatgagctccaacaaaag
aaaaaagggctggatgcagagaaaaagttaattgaaatgagaataaaggagtttcagtcc
gccatggagtgtatattgcggtatcttgaggacaggaaagtgaatgaggttggtatctct
gttttcggaaaattgaagttcgatgaaacttcggattggaagcgtatatataggatgata
atgcgggagcgtcgcagacttggggagggattacccatttatgcttaccggagtgatatt
ctacagcaaatacattctcaacaggtaatggtcttagttggagagaccggttctggtaag
agtacacagttggtgcagtttcttgctgattcaagcatcatcggtgctaatgaatccatt
atatgcactcagccacgaaagattgctgccaggtcattggcactgagggtccaggaagaa
agtaatggatgctatgaaaacaactcgatcaagttttatcctacattttcatcctcaaat
gagtttaattgtggaatagtattcatgacagacaactgtctattgcagcagtacatgaaa
gatgataatttgtctgggatctcatgccttataattgatgaggctcatgaaaggagccta
aatacagatctactgttggcattgataaagagtttgctttgtaggagggaagaaatgcgg
cttatcattatgtctgctacagctgatgcaaagcagctttctgattacttttgtggctgt
ggaatatttcatgttgtagggagaaactttccagttgaagtgagatatgttccttcggcc
tatgtgggacagtctggtcctgccattgttgcatcatatgtttctgatgtagtgagaatg
gcaactgaagttcacagaacagagaaagagggaacaattcttgcgtttttgacctcacag
atggaggtagaatgggcttgtgaaaagtttgaagctctctctgctgtagctttgcccttg
catggcaagctttcacctgaggagcagctatgtgttttccagaacattcctggaaaaaga
aaggtgatatttgcaactaatcttgcagagacatcacttacaattcctggtgtcaagtat
gtcatagatcctgggtttgttaaagatagtcgatatgaacctggcagtggaatgaatgta
cttaaagtttgctggatcagccaaagctctgctgatcaacgggctggtcgtgctgggagg
actgagcctggtaggtgttatagactctactcagaatttgattataattctatggcacca
aatcaggaacctgagatccgacgagttcatcttggtgtggcagtgttgaggatacttgcc
ttgggagtgaagaacgtgcaggattttgattatgttgatgctccaagtcctagttctatt
gatatggcaattaggaatctaattcaattaggagcaattagattgaacaataataattat
gaattaactgaagaaggtaggtacttggtaaagatgggtgttgagcccaggcttggtaat
cttattcttggctgttacaagtatggtttggtaaaggaaggtcttactcttgcagcagtg
atggccaatgccagtagcatcttttgcagagtaggaaatgaaggcgataaacagagatct
gattgccttaaagtgcaattttgccattgtgatggtgacctgtttactcttctgtctgtg
tacaaggaatgggaagctttgccccaagagaggaaaaacaaatggtgttgggaaaacagt
attaatgccaagtccatgaggagatgccaagacactattaaggatttggaatcttgcctt
gagtatgaacttgatgttgttactcctagttactggcgttgggatccttacaactcttct
gattgtgataagtatctaaagatggctatactgtcctcactctctgagaatgtagccatg
tactctggatgccatcaacttggttataaagtggcattaactgggcagcttgttcaactt
catccatcttgttcgttgctggtattcactgagaaacctagctgggttgtttttggtgag
atactgtctgcttccactcaatatttggtctgtgtgaatgcttttgacgttgaatcattg
tgtacccttgaccctcctccattgtttgatgtatttgagatggaaagaaagaagttgcaa
atgaagatgtgggctggtcttggctgtattctgctcaagagattttgtgggaaaggaaat
tgtaatctgcttggtcttgtgtcacgcataagaacagcttgcaaggatgaacgtatcttc
attgaagttaatgttgacctgaatgaaattcagctatatgcctccccacgtgacatggaa
ttggccattgcaatggttaatgaagttctggaatatgagagaaaatggctgcgtgctgaa
tgcttggagaaatggttgtatcgtgggtctggggtctcatctccagtagctctgtttgga
tctggtgctgagataaagcatttggaagttgaaaacaggtgcttgagtgttgatgtatgt
catcctaatataagttcaattaatgataaggagcttttgatgtttcttgaaaagaattcc
tcaagttgtatctgtgctgtgcacaagtttacgagtgtagcacaggatgttgaagacaga
gagaagtggggcaggatatcatttctctcccctgatgcggccaaaaaggctgctgatctt
gatggagtggagtttcatggcttatccttgaaaatagttcattcacaggcagctagtgga
ggggatagagcattttctttccctgctgttaaagctaaattatgttggcctcgcagactt
agcaagggatttggtattcttagatgtgaaataaaggatgttacttcaatcttaatagat
ttccgtggccttgtgataggagggagggctgttcgatgtgaagttggcagaaggagcctg
gatagtattgtgataggtggacttcataaggaactctcagaacctgaaattttagatgta
ctgagaactgctaccagtaggaggattgtggattttttcttggtgagaggagatgctgtt
gagaatcccccatgcaatgtctgtgaggaggcgctcttaaaagaaatttctccctttatg
cctaaaaggcacccccacacttctccttgccatgttcaggtgtattcacctgagccaaag
gatgccttcatgagagctttgatcacttttgatggaagattacatttggaggcagcaaag
gctttggagcaaattgaaggaaaagttttgcctggatgtcattcttggcagaagataatg
tgccagcagttgtttcatagctccttgatattccctttacctgtttatcgtgtgattaag
gaaccactggataagttacttgctagcttcagctgtaaagagggtctgaagtgcgagcta
gaaatgactgctaatggttcctaccgtatcaaaataacagctaatgccacaaagacagta
gcagaggttaggagacctcttgaagaacttactcggggaaaaaccattgtccacatgagt
ctatcccctccggttctacaactgctattgtccagggatggcattaatcttaaaagctcg
gtgcagcaagagacagaaacatgcattctttttgatcggcacaacctgactttgcgggta
tttggctctccagaaaaggttgatttggcccagcagaagctaattcagtctttactcact
ctccatgaaagcatgcagttaaaagtccacctccgagggagagatttacctcctgatctg
atgaagcaagtggttaagagttttgggccagatctccatgggctgaaagagaagatacca
gaggcagactttactctcaacacacgtcaccagataatctatcttcgtggtaaaatggag
ttgaaaacaaaagtagaggaattaattcatgagattgctagttcaagtagtcatttggct
gataggcttgggactggactggattgcccaatttgcttgtgtgaggtggaggatggtttt
cagcttgaaaactgtggtcatttgttctgtcggatgtgtctagtggagcaatgtgaatct
gctataagaaaccaaggtgatttcccgatatgctgcacgcatgcaggctgtggggatccc
attctgcttgtagatttgaaagctcttttatctaacgagaagttggaggaactttttaga
gcctctctgggagcttttgtggcttctagtgagggcagatacaggttttgcccatctcct
gattgtccctccatttatcgagtagctagtccttcagcggcagccggtgagccatttgtt
tgcggagcatgttatgcagagacatgtacaaagtgtcacttggagtatcatccttacgtt
tcatgtgagagatacaaggggtacaaggaggatccagacttatctctcaaggagtggtgc
aaagggaaagaacatgtcaaggcctgccctgcatgtagctatacaattgagaaggtagat
ggctgcaaccacattgagtgcaagtgtgggaagcatgtctgctgggtttgcttggatttc
tttggaactagtgatgcttgttatagccatttgagaactatacacatggccatcatataa
DBGET
integrated database retrieval system
