Prosopis cineraria: 129308734
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Entry
129308734 CDS
T09047
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129308734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcin03041
]
129308734
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129308734
Spliceosome [BR:
pcin03041
]
Complex C
Other components
Step II factors
129308734
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
AAA_30
nSTAND3
AAA_24
Flavi_DEAD
T2SSE
AAA_16
ABC_tran
Sigma54_activ_2
PhoH
Sigma54_activat
AAA_7
Motif
Other DBs
NCBI-GeneID:
129308734
NCBI-ProteinID:
XP_054806041
LinkDB
All DBs
Position
Unknown
AA seq
1270 aa
AA seq
DB search
MEKGDGAAILDLDKTTVTLEPEKSIGGGLYVPGKDKVVYIPQERKSRLGLDVLANAKRGG
SQLDGGFKVPKEKITSMAASAEEEERPEISAVDEGTNVRSVSSKKHANRRYREVTSESSQ
AESSVTEDQYRTRPSEHMVSDGPASPSKYEKEDHRSERRHLKHDSRSDGRSIHHRSYNDS
RERYSERERDSHGRYDYEYGRKRNRYESSRRAPGRSDWDDGRWEWEETPRRDSASYSSKR
HQPSPSPMFVGASPDARLVSPWLGGHTSHSSFASSSPWDHVSPSPVPIRASGSSAKSSGA
RHSGRSYRLTFSSENSKSYEDETADNANLGEEHHYEISESMRLEMEYDADRAWYDREEGS
TLDADNSSVFLGDEASFQKKEAELAKRLVRRDGTKMSLAQSKRLSQLTADNAQWEDRQLL
RSGAVRGTEVQTEFDEEEERKVILLVHDTKPPFLDGRVVFTKQAEPIMPIKDPTSDMAII
SRKGSTLVREVHEKQSQNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAVVGEQGEIDF
KEDAKFAQHLKKGEAVSDFAKSKSISEQRQYLPIFSVREELLQVIRENQVVVVVGETGSG
KTTQLTQYLHEDGYTKGGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTG
PDTVIKYMTDGVLLRETLKDSDLDKYRVVVMDEAHERSLSTDVLFGILKKVVAHRLDFKL
IVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNILWSKTPCEDYVEAAVKQAMTIHITSPP
GDILIFMTGQDEIEAACYALAERMEQVVSSSSREVPKLLILPIYSQLPADLQAKIFQKAE
DGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAG
RAGRTGPGTCYRLYTENAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKVDNLLDFDFMDPP
PQDNILNSMYQLWVLGALNNVGSLTDLGWKMVEFPLDPPLAKMLLMGEQLGCVEEVLTIV
SMLSVPSVFFRPKDRAEESDAARERFFVPESDHLTLYNVYQQWKQHDYRGDWCNDHFLHV
KGLRKAREVRSQLLDILKTLKIPLTSSWPDTDIVRKAICSAYFHNAARLKGVGEYVNCRN
GMPCHLHPSSALFGMGCTPEYVVYHELVLTSKEYMQCATAVEPQWLAELGPMFFSVKESD
TSLLEHKKRQKEEKTAMEEEMENLKKAQVEAERERKEKEKQNKAKNQQQVSMPGLRKGSS
TFLRPKKLGL
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaggagatggtgctgcaatccttgacctggacaagacaacagttacgttggaa
ccagagaagtccattggcggcggcctgtatgttcctgggaaggataaggtggtttacatc
cctcaagaaagaaaatctcgtttaggactagatgtccttgccaatgcaaagcggggagga
tctcagcttgatgggggattcaaggtaccaaaagaaaagataacttctatggcagcatct
gcggaggaagaagaaaggcccgagatttctgctgtggatgaaggtactaatgttagatct
gttagttcgaagaagcatgctaataggagataccgtgaagtgactagtgaatcgtcgcaa
gcagaaagttctgtgactgaagatcagtatagaactcgtccaagtgagcatatggtttca
gatggtcctgcttcaccttctaaatatgaaaaggaggatcatagaagtgagagaagacat
ctcaagcatgattcaagaagtgacggtagaagcatacatcatagaagctacaatgatagt
agggaacggtattcagaaagggaaagggattcgcatggcagatatgattatgaatatggt
agaaagagaaacagatatgaaagttccaggagagcaccaggcaggtctgactgggatgat
ggtagatgggaatgggaagagactccacgaagggacagtgcctcttattcttctaagcgt
catcaaccttcaccatcgccaatgtttgttggtgcctcacctgatgcacgattagtttct
ccatggttggggggtcatacttcacattcatcctttgcttcatcttctccctgggaccat
gtatctccatctccagttccaatacgtgcttctggatcttcagccaaatcttctggagcc
aggcatagtggaaggtcctatcgcctaactttttcttcggaaaattcgaagtcatatgag
gatgaaactgcagataatgctaatttgggtgaagaacaccactatgagatttctgaaagc
atgcgtctagagatggaatatgatgctgaccgagcatggtatgatagagaggaagggagt
acccttgatgcagataactcatcagtttttctgggagacgaggcttcctttcagaaaaaa
gaagcagagttggccaaaagactggtccgaagagacgggacaaagatgtcccttgctcag
agcaaaaggctgtctcaactcacagctgataatgctcagtgggaggaccggcaactgctg
agatcgggagctgttagaggtacagaagttcaaactgaatttgatgaagaggaagaacgc
aaggttatccttctcgtgcatgatacaaagccacctttcttagatggaagagttgttttt
acaaagcaggcagagcctataatgccaataaaagatcctacatctgatatggctataatt
tctcgcaaaggatccactctagtaagagaagtccatgaaaagcaaagccagaataagtct
cgtcaacgcttttgggagcttgcgggatcaaaactgggtgacatcctaggggttgagaaa
acagctgagcagattgatgcagatactgctgtggtgggtgaacaaggagaaattgatttc
aaggaggatgccaagtttgcccagcatttgaagaagggagaagctgtgagtgactttgcg
aagtcaaaaagcatttctgagcaaagacaatatttacccatattttctgtgcgtgaagag
ctgttacaggtaattcgagagaatcaggtggtggtggtggtgggagaaacaggctctgga
aagacaacacaattgacacagtatctgcatgaggatggctatactaaaggtggtatagta
ggctgcacccaaccaaggcgtgtggcagccatgagtgttgctaagagagtcagtgaggag
atggagacagagttgggtgataaagttggctatgcaatacgttttgaggatgtaacgggg
ccagatactgttatcaagtacatgactgatggggtgcttcttcgggaaacactaaaagac
tctgatttagacaagtatagggtcgttgtcatggatgaagcccatgaaaggtcacttagc
acagatgttctatttggaatattgaagaaagtggttgcccaccgtcttgatttcaagctg
atcgtcacatctgcaactctaaatgcacaaaagttttcaaatttcttcggaagtgtgcca
atattccacattcccgggagaacatttcctgttaatatattatggagtaaaactccatgc
gaagactacgtcgaagcagcagtgaagcaggcgatgactattcatataaccagcccacca
ggtgacattcttattttcatgactggccaagatgagattgaggcagcgtgttatgccctt
gctgagagaatggaacaggtggtatcatcttcgagtagagaggtccctaaactcctgatt
cttcccatatactctcagctgcctgcggacttgcaagcaaagatattccagaaagcagaa
gacggagctcgcaagtgcattgtagccactaatattgctgagacatccttgactgtggat
ggtattttttacgtcatcgacacagggtatggtaaaatgaaggtgtataaccctaggatg
ggtatggatgctcttcaagtattccctgtcagccgtgctgctgctgaccagcgtgctggg
cgagctggtagaaccggccccggtacatgttatcggctgtatacagagaatgcctacctc
aatgagatgttgcctagccctgtaccagagatccaaaggaccaacctaggcaatgtggtc
ttgttgctcaaatctcttaaagttgataacttgcttgattttgacttcatggatccacct
ccccaagataatattctcaactctatgtatcagttatgggtgttgggcgcgcttaataat
gtcggcagcttaactgatctcggatggaagatggttgagtttccattggacccacccctt
gctaagatgcttttgatgggtgaacagctgggttgtgtggaggaggtattgacaattgtt
tcaatgctttcagttccatctgttttcttcagacccaaggacagggcagaggagagcgac
gcggctcgtgaaagatttttcgtgccagaatctgatcatttaaccctgtacaatgtttat
cagcaatggaaacaacacgattacaggggtgattggtgcaatgatcattttttgcatgtt
aaaggtctaagaaaggccagggaggtgagatcccagctgcttgatattctcaagacttta
aagatacccctaacatcatcttggccggataccgacatcgttcggaaagctatctgctca
gcgtactttcacaatgcagcaagattgaagggagtgggagagtatgtgaactgccggaat
ggaatgccatgccatctccatcctagcagtgccctcttcggcatgggctgtactccggag
tacgtggtctatcacgagctagtcttgacctcgaaagagtatatgcaatgtgccacggct
gtggagccccagtggcttgctgagctgggacccatgttcttctctgttaaggagtctgat
acgtcattattggagcacaagaagaggcagaaagaagaaaaaacagctatggaagaggag
atggagaatttaaagaaggcccaggttgaggctgagagagaaaggaaggagaaggagaag
caaaacaaggccaagaatcaacagcaagtctctatgcctggtctacgcaagggttcatcc
acatttttgagaccaaagaagcttggtttgtaa
DBGET
integrated database retrieval system
