Prosopis cineraria: 129308809
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Entry
129308809 CDS
T09047
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129308809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcin03041
]
129308809
03009 Ribosome biogenesis [BR:
pcin03009
]
129308809
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129308809
Spliceosome [BR:
pcin03041
]
Complex A
U1 snRNP components
U1 related factors
129308809
Complex B
129308809
Ribosome biogenesis [BR:
pcin03009
]
Eukaryotic type
Pre-60S particles
Helicases
129308809
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
129308809
NCBI-ProteinID:
XP_054806176
LinkDB
All DBs
Position
Unknown
AA seq
668 aa
AA seq
DB search
MNPYDNRYTDSTSYRNRRSDLVGSMAPMVPPVIGGASSSYSRGGPAPHVPPPVGYNMGGR
GAGGAFGTAPVAPNYNELPPFMPPPGGFDIGRGGGTSQRGFGGRHGNGYVGDRKDDIGRR
GGGRDRGSSLMGGRGGGRFGGSHGDKTWGRGGAGARGFGGAAGLGGGRGRGRGDGGGGRG
GRHGGSSKDDLDNIALPKQDFRNLVPFEKNFYIESPSVRAMSDHELMVYRATREITVQGQ
DIPKPIRTFQDANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA
YLLPSLVHISAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRTNIRSTCIYGGAPK
GPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVG
QIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSSDLKANQSINQVVEVVTEVEKYN
RLIRLLKEMMDGSRILIFIETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKS
GRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHAN
VKFARDLIKILQDAGQIVSPALSALSRSASSGQFGSGGNFRSRGRGGYGNRGHMSGSNSI
PLGSRKPW
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaatccttacgacaacagatatactgactcgacttcttatcgcaaccgcaggagtgat
ttagttggatctatggcgccgatggtccctccagtgattgggggtgccagctcgagctac
agccgcggaggtcctgctcctcatgttcctccaccggttggttataatatgggtggaaga
ggagctgggggtgcttttggaacggcacctgttgccccaaattataatgagttgccgccg
tttatgccacctcctggaggctttgacataggtcgcggaggtgggactagccaaagagga
ttcggtggtagacacggaaacggttatgttggtgatagaaaagatgacataggtcgtcgc
gggggtggaagagatcggggcagcagtttgatgggaggccggggaggtggtagatttggt
gggtctcacggggataagacttgggggagaggtggggctggagctagaggattcggtgga
gccgctggattgggtggtggccgtggccgtggccgtggtgatggtggcggagggagagga
ggaagacatggtggatcttccaaggatgacttggacaacatagcacttcccaagcaagat
tttagaaatttggttccctttgagaagaatttttacattgaaagcccatcggtacgggca
atgtctgatcatgagcttatggtttaccgtgccactagggagatcacagtgcaagggcaa
gacattcctaaaccaattcgaacgtttcaagatgcaaactttcctgattactgccttgag
gtgattgccaaattgggttttgtggagcctacaccaattcaggctcaaggttggcccatg
gctctgaagggtagagatttgattggcattgctgagactggctcaggaaaaacactcgca
tatctgcttccttctttagtgcacatcagcgcacaacctcgattggtacaaggtgaaggt
cccattgtcttagttctggcacccactagagagttagcggttcaaattcaggaagaagct
ttaaaatttggttctcgaacaaatattagaagtacttgtatctatggtggtgccccaaag
gggcctcaaattcgtgatcttaaaagaggtgttgaaatcgttattgctacacctggtcgg
ctaatagatatgttggaagctcagcacacaaatctgcgaagagtgacttaccttgtgttg
gatgaagctgatagaatgctggacatgggctttgaacctcagataagaaaaattgttggg
cagatccggcctgatagacagacattgtactggagtgcaacatggcccagagaggttgaa
actctggcaaggcagtttctacgcaacccatataaggtaattattggatcatcagatctg
aaagcaaatcaatctataaatcaagttgttgaagttgtaacagaggtggagaaatacaat
agattgatcagattgcttaaagaaatgatggatggaagtcgaattcttatattcattgag
acaaaaaagggttgtgatcaagttacaagacaattgagaatggatggctggcctgcactt
tctatccatggtgataaaaaccaggccgaaagggactgggtgttggctgaatttaagagt
ggcagaagtccaataatgactgccactgatgttgctgctcggggtcttgatgtgaaggac
ataaaatgtgtgatcaattatgatttcccctcaagcctggaagattatgtccacagaatt
ggtcgaaccggtcgtgcaggggctaaaggaactgccttcacctttttcacgcatgcaaat
gtcaagtttgccagggatttgatcaagatcttgcaagatgctggccagattgtgagtcct
gctctatctgccttgtctcggtcagccagttctggtcaatttggatctgggggaaacttc
cgctccaggggacggggaggttatggtaatagaggtcacatgtcaggatctaattccatt
cctctgggttcaaggaagccttggtag
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