Prosopis cineraria: 129309193
Help
Entry
129309193 CDS
T09047
Name
(RefSeq) dicer-like protein 4 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pcin
Prosopis cineraria
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pcin03036
]
129309193
Chromosome and associated proteins [BR:
pcin03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
129309193
microRNA pathway
RISC loading complex
129309193
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
dsrm
ResIII
DND1_DSRM
PAZ
Cas3-like_C_2
SLFN-g3_helicase
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
129309193
NCBI-ProteinID:
XP_054806589
LinkDB
All DBs
Position
Unknown
AA seq
1695 aa
AA seq
DB search
MLDAKRLSPQSRRTLSILVPSSVSVTLASTHSLGMRLLCSKPPIMPGVEASGTVDSSDSS
SSSSLSDHLLSLSLNGVHKQTESVSEDQFVKKDPREIAREYQLELCKKALKENIIVYLGT
GCGKTHIAVLLMYEMGHLIRKPQKNVCVFLAPTVALVNQQADVIEESTDFKVGVYRGSSK
RLKKHQDWMQEIEQHEVLVMTPQILLRGLSHTFIKMEMISLLIFDECHHAQVKSNHPYAE
IMKVFYERESSKIPRIFGMTASPVVGKGASSKGNLSRSINSLERLLDSKVYSVSQKEVDT
FVAPPVVTIYYYGRSANEPLYTNYCTKLWEIKCQCIEILRSSTEYHLKRRNTKKLLNRMH
NNVLFCLENLGVCGVLQASRVLLSGDHSERLEFVEEEGSASEYSFCDKYLARVSEFFISE
CMKGDHLSDLSSLDNLKEPLFSRKLLRLIGILSSFRPQPDMKCIIFVNRIVTARSLSYIL
QQLKILARWKSDFLVGVHAGIKSSSRKTMSIILDKFRSGELNLLVATKVGEEGLDIQTCC
LVIRFDLPETVASFIQSRGRARMAKSEYAFLVDSGNKKDMDLIECFKEDENRMNKEVAFR
TSYDTHIIPEERIYKVISTGASVTSAYSVSLLHNYCSKLPHDEYFDPKPEFFYFDDLGGT
VCHVTLPSNAPIHQIVSAPHGSMEAAKKAACLQAVEELHKLGALSDCLLPRQDEANPEEV
SDSSDSDENEDDNSRGELYEMLVPSAFRQAWSHSDDIVHLNSYLLKFRPSPEDRIYKEFG
LFMMTRLPAEAVKLEIDLHLARGRTVMTRFVPFGAIEFDKAEIQMAQHFQEMSLKIILDR
SEFVHEFVPLGSSDVLQTSTSTFYLVLPVIMQDCERTMSVDWKTVKRCLSSPIFRPPGQP
VTPKLFPWRGNLQLADGWKSVSDIENSLVYAPHKKLFYFITEIVYEKDALSPYKDLGSSS
YADHFIKRFSIHLKYPKQPLLCAKPLFNLHNLLHNRKQEDTETQELEEYFIYLPPELCEL
KIIGFSKDIGSSLSLVPSIMHRLGNLLVAIELKHLLRSSFSEADEVSAERVLEALTTEKC
QERLSLERLEVLGDAFLKFAVARHFFLMNDSLHEGDLTRRRSNVVNNSNLFKLATKRNLQ
VYIRDQAFDPSQFFALGHPCLRVCTPETEESIHSCLNSPEEQGRSSEVRCNKNHHWLYRK
TVADVIEALIGAFIIDSGFKAATAFLTYLGIQVKFESLQVVNACKASMGYIPLSMHIDIP
SLEDELKYHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPQLK
PGQLTDLRSVSVNNKAFAYVAVGKGFHNFLLCDSHGLSDAIEKYVDYIKGSKAHSGVHGG
PKCPKALGDLVESCVGAILVDSGFNLNSVWKIMTSFLENIMKFSSGLQLSPIRDLQELCQ
SHSLDLQFLKSKTSRMFSVEAKVTGKDVSETASATSMNQKEASRIASQLVFSELKSKGWK
PKSKSLEEVLKSTFKAEGKLLGYDETPIDITEAGIEPVMVEGDQCSSFDPEIFRICDDEV
VDGYPPHSTSVRQQVPSSSVTGKLGEEIEDHERDCDSQRARMLDTVSECVVKGTSRSRLY
EFCAANCWKPPSFECCKVEGPDHLKLFTCKVTLEIEDASNMILECVGTPQSRKKEAAEAA
AEGAFWYLEKEGHLL
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgctagatgcgaagaggttatctcctcaaagccgcagaacactttcgattctcgtgcca
tcatccgtttcggtcacactagcctccacacattctctgggcatgaggcttttgtgctcc
aaacctccgataatgccgggtgtggaagcctctggcacagtcgattcctcggactcatct
tcgtcttcaagtctttctgatcatttgctgtctttatctctcaatggagtgcataaacag
acggagtcggtttccgaagaccaatttgtgaaaaaagatcctcgggaaattgccagggag
tatcaattggaattatgcaagaaagctctgaaggaaaatataattgtgtatctggggaca
ggttgtgggaagactcacatcgctgtgttgcttatgtatgagatggggcacttgatacgg
aagcctcagaagaacgtatgtgtttttcttgcccctacagtggcattagttaaccagcaa
gcagatgtgatagaagagtctacggattttaaggttggggtttaccgtgggagctcaaag
cgcttgaaaaaacatcaagattggatgcaagagatcgagcaacatgaggttcttgttatg
acccctcagatacttttgcgcggtttatctcacactttcataaaaatggagatgatttct
cttttaatatttgatgaatgccatcatgcccaagtcaaaagcaaccatccatatgcagaa
atcatgaaagtcttctatgaacgggaatccagtaagattccccgcatctttggcatgaca
gcttcgccagttgtagggaaaggtgcttctagtaaaggaaatctatcaaggagcatcaat
agtctcgaacgtttgcttgactcaaaggtatattcggtctcgcagaaagaagtggatact
tttgtggcccctcctgtagttactatatattattatggtcgtagtgccaatgaaccattg
tacacgaattactgtaccaagctatgggagattaaatgtcagtgcatagaaatccttaga
agcagtacagaatatcacttgaaacggaggaacacaaagaaacttctgaaccgaatgcat
aataatgtgcttttctgtctggagaatcttggcgtttgtggagtattgcaagctagtcgt
gttcttttgagtggtgatcactctgaaaggcttgaatttgtggaggaggaaggaagtgca
agtgaatactctttttgtgacaaatatctagcacgggtgtctgagttctttatttctgaa
tgcatgaaaggtgaccatttgtctgatctctcttctctggacaatttaaaagagcctctt
ttctcaagaaagcttttacgcctcattgggatactgtcctcatttaggccacaaccagat
atgaaatgtataatttttgtaaatagaattgttactgcaagatccctgtcatacatacta
caacagctcaaaattttagcacgttggaaaagtgattttctggtaggagttcatgctgga
ataaaaagttcatcgagaaagactatgagcatcattcttgacaagttccgcagtggagag
ttgaatttattggttgcaaccaaagtgggtgaagaaggacttgatattcagacatgttgc
cttgtcatacgatttgatcttcctgaaactgttgcgagctttatacaatcaagaggtcgt
gcacgtatggctaagtcagaatatgcatttttggtggacagtggcaataagaaggatatg
gacttgattgaatgttttaaggaagatgaaaaccgtatgaacaaggaagttgctttccgc
acatcctatgatacacatatcatccctgaggaaagaatttacaaagtcatatcaactggc
gcttctgtcacttctgcatatagtgtctcattgcttcacaactattgttcgaagcttcca
catgatgagtattttgaccccaagccagaatttttttactttgatgatttagggggaact
gtctgtcacgtaacattgccttccaatgctcccatacatcaaattgttagtgcaccacat
ggttcaatggaagctgctaagaaggctgcttgtttgcaagcggttgaggaactgcataaa
ttaggtgctttgagtgattgtctgttgccaaggcaagatgaggcaaacccagaggaggtt
tcagattcttctgattcagatgaaaatgaagatgacaactcacgaggagaattatatgag
atgctagttccttcagcctttaggcaggcctggtcacattcagatgatattgtccatctt
aactcttaccttttaaaatttagaccctctccagaggatcggatctataaagagtttggt
ttatttatgatgacacgtcttcctgcggaggctgtgaaattggaaattgatcttcatctt
gctcgtggtagaactgtgatgacacgatttgttccatttggtgctattgaatttgacaaa
gctgagattcagatggcacagcattttcaggagatgtccctaaaaattattcttgatcga
tcagaatttgttcatgaatttgtacccttgggtagttctgatgtcttgcaaacaagcacc
tcaaccttctatcttgtgcttccagtaataatgcaagactgtgaaaggactatgtcagta
gattggaagaccgtgaaaagatgcctttcttcacccatttttaggcctccaggtcaacct
gtaactccaaaattgtttccttggagagggaacctgcaacttgctgatggttggaaaagt
gtaagcgatattgagaatagtttagtatatgccccacacaagaagctgttttattttatt
actgagattgtttatgaaaaggatgcactgagtccttataaggatttgggcagttcaagc
tatgcggaccactttattaaaaggttttccattcatcttaaataccccaagcaaccgctt
ctctgtgcaaagccactatttaatttgcacaacttgcttcacaaccgaaagcaagaggat
acagaaactcaggaactggaggagtatttcatctatttgcctcctgagctttgtgaacta
aaaattataggcttctctaaagatattggtagttccctgtctttggtaccatccatcatg
catcgtcttggaaacttgctggttgcaattgaactcaagcatctgctacgttcttctttc
tctgaggcagatgaagtcagtgcagaaagagttttggaggcactcaccactgagaaatgt
caggagcgcctttctcttgaaagacttgaagtgcttggtgatgctttccttaaatttgca
gttgcacgccattttttcctcatgaatgatagccttcatgaaggagaccttacaaggagg
cgatcaaatgttgtaaataactccaatttgttcaagttagctactaaacggaatctgcag
gtgtacattcgcgatcaggcatttgatccttctcagttctttgcattgggccatccttgc
ctaagagtttgtaccccggaaactgaagaaagcattcactcctgtttaaattctccagag
gagcagggaagatcatctgaagttcgttgcaataaaaatcaccactggctttatcggaaa
acagttgctgatgtcattgaagctcttattggagcattcataattgacagtggctttaaa
gcagccactgcatttcttacatatcttggcatacaagttaagtttgaatccttacaggta
gtcaatgcttgcaaagcaagtatgggttacatccccctttccatgcatatagacattcct
tcccttgaagatgagttaaagtatcactttgtccataagggtttacttctccaagcattt
gtacatccttcttacaataagcatgggggtggctgttatcagcgattggagtttcttgga
gatgctgtcttggattatttgattacttcatacctttactccgcttatccacagctaaag
cctggtcaattaacagacctgagatcagtgtcagttaacaataaggcttttgcctatgtc
gcagtgggtaaaggatttcataatttccttttatgtgattctcatggtctgtctgatgca
atagaaaagtatgtggactacattaaaggatctaaagcgcattctggtgttcatggaggg
ccaaaatgtcccaaggccctaggtgacttggtagagtcttgtgttggtgccattctggtt
gattctggtttcaatctgaacagtgtttggaagattatgacttcattcttggagaacata
atgaaattttcgtcaggcttgcagcttagtcctattagggacttgcaagaactttgccaa
tctcatagtttggacttgcagtttctgaaatccaaaacaagcagaatgttttctgttgaa
gccaaggtgactgggaaagatgtatctgaaactgcttcagcaaccagcatgaaccaaaaa
gaggcttctagaattgcttcacaactagtattttctgaattaaagtctaagggctggaaa
ccgaagtcaaaatctttggaggaagttcttaagtcaacttttaaagcagaaggcaaactt
cttggttatgatgaaacacccattgatataactgaagctggcatcgagcctgtaatggtt
gagggagaccaatgcagcagttttgatccagaaatttttcgcatctgtgatgatgaggta
gttgacggataccccccacattcaacatctgttaggcagcaggttccatcttcttccgtc
acagggaaacttggggaggaaattgaagatcacgaacgggactgtgactcacagagggca
cgtatgttagatactgtttcagaatgtgtggtcaaaggaacatcaagatcgcggttatat
gaattctgtgctgccaattgctggaaacctccttcatttgaatgctgcaaagtggaggga
ccagaccatctgaagttatttacttgcaaggtgaccttggagatagaagatgcttcaaat
atgattttggagtgtgttggaactcctcaatcaaggaagaaagaagcagcagaggctgca
gctgagggcgcattttggtacctggaaaaggaaggtcacttactttga
DBGET
integrated database retrieval system
